Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08-
07] 1,637 sequences; 39,468,807 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq107 98.7 1e-15
seq329 96.9 3e-15
seq845 95.1 1e-14
>seq107
Length=187947
Score = 98.7 bits (108), Expect = 1e-15
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | || || ||||| | || || ||| | |||||| |||| | |||||
Sbjct 35264 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 35205
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|| |||||||| | ||||| ||||| ||||| || || || || || |||||
Sbjct 35204 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 35145
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
||| | || || | || |||||| ||||||||||||| | | | | |||||| |||
Sbjct 35144 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 35085
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|| ||||| ||||| ||| | || |||||||
Sbjct 35084 ATCCAAAAGGAATCCACTCTTCACTTGGTCCT 35053
>seq329
Length=307717
Score = 96.9 bits (106), Expect = 3e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887
|||||||||||| | ||||| ||||| ||||| || || || ||||| |||||
Sbjct 134238 CGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCA 134179
Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947
|||| | | || | || || |||||||||||||||| | | | | | |||||||| ||
Sbjct 134178 ACAACGTTTGATCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAA 134119
Query 26948 CATTCAAAAAGAATCTAC 26965
||| ||||||||||| ||
Sbjct 134118 CATCCAAAAAGAATCCAC 134101
Score = 96.9 bits (106), Expect = 3e-15
Identities = 127/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 26805 ATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 26864
|||||| |||| | || || | ||| |||||||| | || || |||||| ||
Sbjct 134541 ATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACGTAAAGAGCAAGATTCAGGAT 134482
Query 26865 AAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT 26924
|| || || || || || || ||||| | | || | || ||||||||||| ||||||
Sbjct 134481 AAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAACAACTTGAAGAT 134422
Query 26925 GATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
| | | | | |||||||| ||||||||||| || |||||| ||||||| |||||
Sbjct 134421 GGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTACTCTCCATCTCGTCCT 134366
>seq845
Length=273148
Score = 95.1 bits (104), Expect = 1e-14
Identities = 127/177 (72%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 120325 GCTCGATGATGTTAGTGTTCACGATGACGTCGGCGGCAGCGAAAAACGCGAGAACGTGCT 120384
|||||| | ||| ||| || || |||||| || ||||| || ||||| |||||
Sbjct 252057 GCTCGACAAGGTTCTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAG 252116
Query 120385 TAAGAAAAAATCGTTCTTTATCGTTCAGTTTTTTGTTCCAATCGTCAAAGTCCTTGGACA 120444
| ||| | || || | ||| || ||||| || |||||||||| || |||||| ||||
Sbjct 252117 AGATGAAATAGCGCTCATCATCATTGAGTTTGTTATTCCAATCGTGAAGGTCCTTTGACA 252176
Query 120445 TGTCGATCTCTTCGACTTTCCAGTGACAATCGACCGCTTTCTTGTACGATTGCCAGA 120501
|||||||||||| || ||||| | | | | || || |||||| ||||||||
Sbjct 252177 AGTCGATCTCTTCTGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACATTTGCCAGA 252233
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478652605370640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |