Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08- 07] 1,637 sequences; 39,468,807 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq845 181 2e-40 >seq845 Length=273148 Score = 181 bits (200), Expect = 2e-40 Identities = 357/517 (69%), Gaps = 11/517 (2%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAAC 42691 || ||||| |||||||| || |||||||| ||| ||||| | || | | | | || Sbjct 251847 CCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCA-AGACAAAAACTCTAC 251789 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 || | || | ||||| || ||| | || || ||||||||||||||| || | || Sbjct 251788 CTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCATT 251729 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 ||| || ||||||||||||||| || | | |||| | || || || ||||| || || Sbjct 251728 CGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTTACTTTCTCCAATGA 251669 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871 |||||| | | || || || || |||| ||||| || |||||||| ||||| ||| Sbjct 251668 GCTCATCTCCCGTGATGAAGGTCTCCATACCGACTTCGCGTGCCTCCTCTTCTC---CCA 251612 Query 42872 CCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGAT 42931 | | | |||| || ||| || |||| | ||||||| ||||| || ||||| Sbjct 251611 CTTGAAGCACCGTCCAAGCAAGCAGGCTGTCCAAGATGTCATCACAGAGGCTGTTGAGAT 251552 Query 42932 CGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGACC 42990 ||| | || ||| | || || | || || ||| | || | ||||||||| || Sbjct 251551 CGAACAAGAATTCTTGACCGAGGCTCTTCCTTGTG-CACTTCTTGGCATGAACGCGAACT 251493 Query 42991 TCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAG 43048 | ||| |||| |||||| ||| ||||||||| | |||||| || | ||| || Sbjct 251492 TGATGAAGCAA-TACATCGAGTTCGTCGCCGATCGTCTCCTAGTCGCTCTTGGTAACGAG 251434 Query 43049 CCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAA 43108 | | ||||| | | ||| |||||||| |||||||||||||| | | ||||| Sbjct 251433 AAG-GTGTACAAGTCTGCCAACCCATTCGACTTCATGGAGAACATCTCCCTAGCAGGCAA 251375 Query 43109 GACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||| ||||| ||||||||| | || | ||||||||| Sbjct 251374 GACAAACTTCTTCGAGAAGAGAGTTGGTGACTACCAG 251338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944319876459120