Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08-
07] 1,637 sequences; 39,468,807 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq107 149 1e-30
seq329 125 2e-23
seq34 104 6e-17
seq845 89.7 1e-12
>seq107
Length=187947
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | ||| || | |||| ||| ||| |||||||| || |||||||
Sbjct 35038 CCACCACGTAGACGAAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAA 35097
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| |||||||| ||||| | ||| || || |||||||||||||| || ||| | ||||
Sbjct 35098 AGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGG 35157
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
||||| || || |||||||| || | || || || || || | ||| ||||| ||
Sbjct 35158 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACC 35217
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| || || || || || || |||||||| ||||||||
Sbjct 35218 TCGAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 35264
>seq329
Length=307717
Score = 125 bits (138), Expect = 2e-23
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | ||| || | ||| | ||| ||||| ||||| || ||||| |
Sbjct 133843 CCACCACGGAGACGAAGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGAT 133902
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | ||| || || || ||||| ||||| || || ||||
Sbjct 133903 AGAGTGCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGG 133962
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || ||||| ||||| || | ||||||||| || || | ||| ||| || ||
Sbjct 133963 ATACCCTCCTTATCTTGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACC 134022
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| | ||||| ||||| ||||| || ||||||||||| || |||||
Sbjct 134023 TCCAATGTGATTGTCTTTCCGGTAAGTGTCTTGACGAAGATTTGCAT 134069
Score = 122 bits (134), Expect = 2e-22
Identities = 157/217 (72%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || | |||| ||| |||||||||||| || ||||||
Sbjct 134071 CCACCACGAAGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 134130
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || ||||| | |||||| || |||||||||| ||| |||||| ||
Sbjct 134131 AGGGTGCGACCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGA 134190
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || | || || || || || | ||| ||| || ||
Sbjct 134191 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACC 134250
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463
|| || ||||| ||||| || || |||||||||||||
Sbjct 134251 TCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGA 134287
Score = 105 bits (116), Expect = 2e-17
Identities = 141/192 (73%), Gaps = 8/192 (4%)
Strand=Plus/Plus
Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321
|| |||||||| | || || ||||| || || |||||| | || || || |||
Sbjct 134366 AGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCT 134425
Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378
|| | |||||| ||||||||||||| |||||||| || ||| ||||| || |||
Sbjct 134426 TCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTG---GTCCGGGGGAATTCCCTCCTTA 134482
Query 288379 TCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437
||||| || || ||| || ||||| || || | |||||| || || || ||||| |||||
Sbjct 134483 TCCTGAATCTT-GCTCTTTACGTTGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGAT 134541
Query 288438 CGTCTTCCCGGT 288449
||||| |||||
Sbjct 134542 GGTCTTGCCGGT 134553
Score = 95.1 bits (104), Expect = 3e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| || || || || | ||| || | || | ||||| || || || || || || ||
Sbjct 133612 TGACCGCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCA 133671
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| || || | || || || || || ||||| || ||||||| |||||||| |
Sbjct 133672 GAAAGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGT 133731
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||| || || || || || || || | || || || || || | ||| ||||||
Sbjct 133732 GGGATACCCTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCC 133791
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| | || || ||||| || |||| |||||||||||| ||||||||
Sbjct 133792 ACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 133841
>seq34
Length=307725
Score = 104 bits (114), Expect = 6e-17
Identities = 133/182 (73%), Gaps = 6/182 (3%)
Strand=Plus/Minus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
||||| || || ||||| | || || |||||||| || | ||| ||||| |||||||||
Sbjct 97517 TTTTGAATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATC 97458
Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
| ||| ||||| || ||| ||||| || || |||||||| || | || || ||
Sbjct 97457 AAACGTTGTTGG---TCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 97401
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| |||| ||| || || || || || ||||| ||||| || || || |||||||||
Sbjct 97400 TCAATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACG 97341
Query 288463 AA 288464
||
Sbjct 97340 AA 97339
>seq845
Length=273148
Score = 89.7 bits (98), Expect = 1e-12
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 269112 CGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCT 269171
|||| |||| ||| | || ||| | || ||| | | | || ||||| || | |
Sbjct 251551 CGAACAAGAATTCTTGACCGAGGCTCTTCCTTGTGCACTTCTTGGCATGAACGCGAACTT 251492
Query 269172 CATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAA 269231
||||| ||||| ||||| ||||| || |||||| || | || || ||| | |||||
Sbjct 251491 GATGAAGCAATACATCGAGTTCGTCGCCGATCGTCTCCTAGTCGCTCTTGGTAACGAGAA 251432
Query 269232 AGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGAC 269291
|||||||| || || || |||| ||| ||||| || || || | ||| |||||
Sbjct 251431 GGTGTACAAGTCTGCCAACCCATTCGACTTCATGGAGAACATCTCCCTAGCAGGCAAGAC 251372
Query 269292 GAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATG 269340
||||||||||| ||| | || | ||||| || ||||||| |||
Sbjct 251371 AAACTTCTTCGAGAAGAGAGTTGGTGACTACCAGAAGGCTGGTGTTATG 251323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179629657854886
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |