Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08- 07] 1,637 sequences; 39,468,807 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq329 120 3e-22 seq107 86.0 7e-12 >seq329 Length=307717 Score = 120 bits (132), Expect = 3e-22 Identities = 171/238 (72%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 41972 AATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATT 42031 ||| ||| |||| || | | ||| | |||||| ||||| ||||||||||| ||||| || Sbjct 133605 AATCTATTGACCGCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTT 133664 Query 42032 GTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTG 42091 |||||||| ||||| | | || || | |||||| ||||| || || | |||||| || Sbjct 133665 GTAATCAGAAAGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTG 133724 Query 42092 GTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGC 42150 ||| | ||| | | |||||||| | ||| | |||| |||| | | | || || Sbjct 133725 GTCCGGTGGGATACCCTCCTTGT-CTTGAATCTTTGACTTGACATTGTCAATGGTATCTG 133783 Query 42151 TCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||||| || | || ||||| || || || | ||||| || ||||| ||||| Sbjct 133784 ACGATTCCACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 133841 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||||| |||| ||| || || || ||||| || | ||||| || | || || Sbjct 133861 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCA 133920 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || ||||||||||| || || || || |||||||| | ||| | | |||||| || | Sbjct 133921 AGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGG 133980 Query 42120 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 || ||| ||| | ||| | | | || || ||| || || || | ||||| || || Sbjct 133981 ATCTTTGATTTCA-CGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCTT 134039 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || ||||| || ||||||||||| Sbjct 134040 TCCGGTAAGTGTCTTGACGAAGATTTGCAT 134069 >seq107 Length=187947 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || | || ||| | ||||| || | ||| |||||||| || ||||| || | Sbjct 35038 CCACCACGTAGACGAAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAA 35097 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || || ||||| || ||||| || || || ||||| || | ||| Sbjct 35098 AGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGG 35157 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | |||||||||| ||| || |||| | | | || || ||||| || Sbjct 35158 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACC 35217 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||||||||| ||||| || || || || ||||| ||||| Sbjct 35218 TCGAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 35264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543201684508080