Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08- 07] 1,637 sequences; 39,468,807 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq139 134 5e-26 seq329 98.7 4e-15 seq34 89.7 2e-12 >seq139 Length=236049 Score = 134 bits (148), Expect = 5e-26 Identities = 201/286 (70%), Gaps = 11/286 (4%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || ||||||||||||| || ||||| || ||||||| || ||||| ||||| | Sbjct 186197 ATGCTGTTGTTACTGTTCCCGCCTACTTCAACGACTCACAACGCCAGGCAACAAAAGACG 186138 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 |||| || || || ||||| || ||||| || | |||| |||||||| || || || | Sbjct 186137 CAGGCCAAATCGCCGGTTTGAACGTTCTCAGAGTGGTTAACGAACCTACTGCTGCCGCAC 186078 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAGTATTTGAT 451498 | || || || || | ||||| | || || ||| |||| || | ||| Sbjct 186077 TTGCCTACGGTCTCG----------AGAAAGACGAGGACAAAGTTATTGCCGTCTACGAT 186028 Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558 || ||||||||||| |||| ||||| || ||| || | || || || ||||| Sbjct 186027 TTGGGTGGAGGAACCTTCGATATCTCTGTCCTCGAAATACAAAAGGGTGTTTTCGAAGTC 185968 Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604 ||| | || |||||||| ||||| | || |||||||| | |||| Sbjct 185967 AAGTCTACAAATGGTGACACTCACTTGGGTGGTGAAGACTTCGATA 185922 >seq329 Length=307717 Score = 98.7 bits (108), Expect = 4e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 391060 TCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTG 391119 |||| || || || ||||| || || || |||||||| || || || || || | ||| | Sbjct 134287 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCG 134228 Query 391120 AAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAA 391179 | | | || || || || || ||||| || |||||||| |||||||||||||| | Sbjct 134227 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGA 134168 Query 391180 TTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGG 391239 | ||| | || |||||||| |||||||| | || || || || || || | || | Sbjct 134167 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 134108 Query 391240 ATGCAACACTTCACTTAGT 391258 | | || |||||||| || Sbjct 134107 AATCCACCCTTCACTTGGT 134089 Score = 86.0 bits (94), Expect = 2e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193 || ||||| |||||||| |||||||| || || ||||| || || || ||| |||| ||| Sbjct 134493 AAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAA 134434 Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGA 391240 |||||||||||||| | || ||| || || || ||| | ||||| Sbjct 134433 CAACTTGAAGATGGCCGTACCTTGAGCGACTACAACATTCAAAAGGA 134387 >seq34 Length=307725 Score = 89.7 bits (98), Expect = 2e-12 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 391053 AATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGAT 391112 |||| ||||| || || || || || || || || || ||||| || || || |||||| Sbjct 97333 AATAGCTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGAT 97392 Query 391113 AACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 391172 | ||||| | | || || || || || ||||| |||||||| || || |||||| Sbjct 97393 ACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAA 97452 Query 391173 CGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATT 391232 ||||| || ||| | || || ||||| || || ||| |||| | | || || || ||| Sbjct 97453 CGTTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACATT 97512 Query 391233 GATAAGG 391239 | |||| Sbjct 97513 CAAAAGG 97519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975676961158796