Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08-
07] 1,637 sequences; 39,468,807 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq1126 167 3e-36
>seq1126
Length=162690
Score = 167 bits (184), Expect = 3e-36
Identities = 215/295 (73%), Gaps = 4/295 (1%)
Strand=Plus/Plus
Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806
||||||||| | || | | ||| | |||||| | || | |||||||||||||| |||
Sbjct 99675 GATATTGCTTTTGGAAATGCTCAACGTTTTGGTGTACCCTTCGGATATGGAGGTCCCCAT 99734
Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 153866
||||| |||||||| | || ||||| ||| ||||||| || || | | | |||
Sbjct 99735 GCTGCTTTCTTTGCTGTTAGCGAAAAGTACAAGCGAAAGATTCCCGGACGTCTCATTGGT 99794
Query 153867 CAGTC--AGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 153924
||| || | | | || || |||| || ||||| ||||||||||| ||||| |
Sbjct 99795 GTGTCGAAGGACAGATTG--GGCGATAAGGCTATGAGATTGGCACTACAGACCAGAGAAC 99852
Query 153925 AGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTA 153984
|||||||||| || || || || || ||||| ||||||||||||| ||| |||||||||
Sbjct 99853 AGCATATCAGAAGGGAGAAGGCTACTAGTAATGTCTGCACAGCTCAAGCATTGCTGGCTA 99912
Query 153985 ATATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGGACTACATGCTATAGC 154039
||||| | ||||||||| | || |||||| | | ||||| | ||||| ||
Sbjct 99913 ATATGAGCGCATTCTATGCTGTCTACCATGGTCCTCAAGGACTCAAGGCTATTGC 99967
Score = 114 bits (126), Expect = 1e-20
Identities = 168/235 (71%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 154872 ATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTA-GACAGATATG 154930
|||||||||||||||||| |||| |||||||| || | | |||| | | | | ||
Sbjct 100866 ATTATGATTACATACCCAAGTACATTCGGTGTATTCGAGCCAGAGATTAAGGCTGCT-TG 100924
Query 154931 TAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACA 154990
| | || |||||| | | || ||||| || || | || || || ||| | ||||| ||
Sbjct 100925 TGATATTGTTCATCAGCACGGCGGTCAAGTCTACATGGACGGTGCCAATATGAATGCTCA 100984
Query 154991 GGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAA 155050
| || | || ||||| |||||| ||||| |||||||| ||| | || ||
Sbjct 100985 AATTGGGTTGTGTTCGCCTGGTGAGATTGGTGCTGATGTCTGTCATCTCAACCTTCACAA 101044
Query 155051 AACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTA 155105
|||||||||||||||||||| || ||||| || || || || || || ||||||
Sbjct 101045 GACATTCTGTATTCCACATGGTGGCGGAGGACCAGGTGTTGGACCAATTGGTGTA 101099
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579200947858080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |