Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08-
07] 1,637 sequences; 39,468,807 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq329 127 2e-23
seq1152 98.7 8e-15
seq125 98.7 8e-15
>seq329
Length=307717
Score = 127 bits (140), Expect = 2e-23
Identities = 260/384 (68%), Gaps = 3/384 (1%)
Strand=Plus/Plus
Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269
|| || |||||||||||||| || || || || | || || ||||| || ||||| |
Sbjct 98630 AACCCTGATGAGGCTGTTGCATACGGCGCTGCCGTCCAGGCTGCTATCCTCTCTGGTGAC 98689
Query 552270 ACTG-ATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGT 552326
||| || || |||| || | || | ||| | ||||| | || | |||||||||
Sbjct 98690 ACTTCATCCAAGTCTACCAACGAGATCCTTCTTCTCGATGTCGCGCCATTGTCTCTTGGT 98749
Query 552327 TTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGT 552386
| || || | ||| || ||||| || || || | | || || || |||||
Sbjct 98750 ATCGAGACTGCTGGTGGACAAATGACCAAGCTCATTCACCGCAACACCACCATTCCCACC 98809
Query 552387 AAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATT 552446
|| || ||| || || ||||| | || ||||| ||| ||| ||| |||||| |
Sbjct 98810 AAGAAGTCTGAAGTCTTCTCTACCTTCTCCGATAACCAACCTGGTGTCTTGATTCAAGTC 98869
Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506
|| || || || |||| ||| || || || || | || || | || | |
Sbjct 98870 TTCGAGGGTGAGAGAACGCGCACAAAGGACAACAACCTTCTCGGAAAGTTCGAACTCACT 98929
Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566
|||||||| |||||||||||||| || || ||||| || || || |||||||| ||||||
Sbjct 98930 GGTATTCCACCTGCTCCTCGTGGTGTTCCACAAATCGAGGTCACCTTCGATATTGATGCC 98989
Query 552567 AATGGAATTTTGAATGTGACTGCT 552590
|| || || ||||||| |||||
Sbjct 98990 AACGGTATCATGAATGTCTCTGCT 99013
Score = 125 bits (138), Expect = 6e-23
Identities = 315/475 (66%), Gaps = 4/475 (1%)
Strand=Plus/Plus
Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114
|||||||| ||||| || ||||| ||| |||| ||||| || | ||| ||||||| ||
Sbjct 97619 GAAATTATCGCCAACGACCAAGGAAACCGAACAACTCCTTCGTTCGTTGCTTTCACAGAC 97678
Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174
|| |||| | | | || ||||| ||||| | |||| | | || ||||| || ||
Sbjct 97679 ACCGAACGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCTACAAACACA 97738
Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234
| || |||||||| ||| | || || | | || || | || || || |||
Sbjct 97739 GTCTTCGATGCTAAGCGTCTGATCGGTCGTAAATTCGCCGACCCAGAAGTCCAAGCTGAT 97798
Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CTAC 550293
|||||||| | || ||| | | | | | ||||| || ||||||| | |
Sbjct 97799 ATGAAGCACTTCCCATTCAAGGTCATCGACCGTGGCGGAAAGCCAGTCATTGAAGTCGAG 97858
Query 550294 TCATGAAGGATCTGT-TAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGA 550352
| | |||| | ||| ||||| |||| ||| |||| || || ||||| || | |
Sbjct 97859 T--TCAAGGGCGAGGCTAAGCAATTCACACCCGAAGAAATCTCCTCGATGGTCTTGGTCA 97916
Query 550353 AAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTG 550412
| |||| | || || || | | ||| | || | | || || | ||||
Sbjct 97917 AGATGAGGGAGACTGCTGAGGCCTACCTCGGTGGAACCGTCAACAACGCTGTCGTCACTG 97976
Query 550413 TACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTG 550472
| |||||||| || | ||||| ||||||||||| || |||||||| || | || || |
Sbjct 97977 TTCCAGCATACTTCACCGACTCCCAACGTCAAGCCACAAAAGATGCAGGTCTCATCGCCG 98036
Query 550473 GACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527
| || |||||||| ||||| ||||| || ||||| || ||||| |||| || ||
Sbjct 98037 GTCTCAATGTTCTCCGTATCATCAACGAGCCTACCGCAGCTGCCATTGCTTACGG 98091
>seq1152
Length=75360
Score = 98.7 bits (108), Expect = 8e-15
Identities = 257/390 (66%), Gaps = 8/390 (2%)
Strand=Plus/Minus
Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269
|| || ||||||||||| || | |||||||| |||||| | | || | || |||
Sbjct 41811 AACCCTGATGAGGCTGTCGCTTTCGGTGCCGCTGTTCAAGGTGGTGTTTTGTCCGGA--- 41755
Query 552270 ACTGATGAAAA-ACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTT 552328
|| ||| ||| | | || || || | ||||| | || | |||||||| |
Sbjct 41754 ---GAGGAAGGTACTG-ATGACATCGTTCTCATGGATGTCAACCCATTGACTCTTGGTAT 41699
Query 552329 AGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAA 552388
|| || ||||||| ||||||| || | ||| ||||| || ||| |||
Sbjct 41698 TGAGACTACTGGAGGTGTTATGACCAAGTTGATCCCAAGAAACACCGTTATCCCTACCCG 41639
Query 552389 AAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTT 552448
||||||| | || || || | || || ||| | | || |||||| | |
Sbjct 41638 CAAATCTCAAATCTTCTCCACAGCCGCCGACAACCAACCCGTAGTCCTGATTCAAGTCTA 41579
Query 552449 TGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGG 552508
||||||||| | || || ||||| || || | ||||||| || | || ||
Sbjct 41578 TGAAGGAGAGCGTGCTTTGACAAAAGACAACAACAACCTTGGTAAATTCGAATTGACTGG 41519
Query 552509 TATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAA 552568
|||||| || || || ||||| || || |||||||||||| | ||||| | || |||||
Sbjct 41518 TATTCCACCAGCACCACGTGGTGTTCCTCAAATTGAAGTTTCCTTCGAACTTGACGCCAA 41459
Query 552569 TGGAATTTTGAATGTGACTGCTTGTGATAA 552598
|||||| ||||| || || ||| |||| ||
Sbjct 41458 TGGAATCTTGAAGGTTACCGCTGGTGACAA 41429
Score = 87.8 bits (96), Expect = 1e-11
Identities = 114/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 549986 AAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAAT 550045
||| ||| || ||||| ||| | ||||||||||| ||| || ||||| ||||||
Sbjct 42947 AAAATAGTCATCGGTATCGATCTTGGAACCACATACTCTTGCGTCGGTGTGATGCAAAAG 42888
Query 550046 GGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCT 550105
|| |||||||| ||| | | || || ||||| || | | |||||| || ||||| |
Sbjct 42887 GGAAAAGTTGAGATTCTGGTAAACGACCAAGGACACCGTATTACTCCTTCATATGTCGCC 42828
Query 550106 TTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAA 550143
||||| || |||| ||| || || |||||||| ||
Sbjct 42827 TTCACCGATGAGGAACGTTTGGTCGGAGATGCAGCCAA 42790
>seq125
Length=247141
Score = 98.7 bits (108), Expect = 8e-15
Identities = 247/373 (66%), Gaps = 2/373 (1%)
Strand=Plus/Plus
Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954
|||||||||||||| ||||| |||||||| | || || || | ||||| ||| |
Sbjct 63395 GCTCTTCGTCGTCTTAGAACAGCTTGCGAGCGTGCTAAGCGTACCCTTTCTAACGGTGCC 63454
Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014
||||| ||||| | || ||||| ||||| || || | || | | ||| |
Sbjct 63455 TCTACCACCGTTGAAATCGACTCATTGTTTGACGGTGAAGACTTCAACGCACAAATTACC 63514
Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAA-ACAATTGAACCAGTAGA 552073
| |||| ||| || ||| | | | | || || || | || || || |
Sbjct 63515 CGTGCCAGATTCGAGGATCTCAACG-TCAAGGCATTCCAAGGCACTTTGGAGCCCGTTGC 63573
Query 552074 ACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGG 552133
|||||| | | ||| | || || || |||||||| || |||| || || ||||||||
Sbjct 63574 GCAAGTTCTCAAGGATGCTAACATCGACAAATCCAAGGTTGATGAGATCGTCCTTGTTGG 63633
Query 552134 TGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAA 552193
||||||||| | ||||| || ||| | | || || | ||||| || || ||
Sbjct 63634 TGGATCTACCCGTATTCCCAAGGTTCAAAAGCTCTTGAGCGAGTTCTTCAACGGAAAGAA 63693
Query 552194 ATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGC 552253
|| | |||| |||| || |||||||||||||| || ||||| || ||||||| |
Sbjct 63694 GTTGGAGAAAAGCATTAACCCTGATGAGGCTGTTGCTTACGGTGCTGCTGTTCAAGCGGG 63753
Query 552254 TATTCTTTCTGGA 552266
||| || || |||
Sbjct 63754 TATCCTCTCAGGA 63766
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029209428057130
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |