Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08-
07] 1,637 sequences; 39,468,807 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq845 138 2e-27
>seq845
Length=273148
Score = 138 bits (152), Expect = 2e-27
Identities = 339/512 (66%), Gaps = 11/512 (2%)
Strand=Plus/Minus
Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGAT-CAACAGCCAGAGCGCTACGTTT 25872
|||| |||| ||| || ||||| | | ||||| ||| | | | | | |||| |||
Sbjct 251843 GCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGA-CAAAAACTCTACCTTT 251785
Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932
| |||| ||||| || ||||||||||| ||||||||||| ||||| || || || ||
Sbjct 251784 GCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCATTCGCT 251725
Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCT 25991
| ||||||||||||||| || || ||| | || || |||||| ||||| |||||
Sbjct 251724 TCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCT-TACTTTCTCCAATGAGCT 251666
Query 25992 CATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTT 26051
|||| | | || || |||||||| | || || || ||||| |||| | | ||||||
Sbjct 251665 CATCTCCCGTGATGAAGGTCTCCATACCGACTTCGCGTGCCTCCTCTTCTC---CCACTT 251609
Query 26052 GCTCCACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCG 26110
| ||| || |||| || | ||| | | |||||| ||||||||| |||||||
Sbjct 251608 GAAGCACCGTCC-AAGCAAGCAGGCTGTCCAAGATGTCATCACAGAGGCTGTTGAGATCG 251550
Query 26111 AGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCA 26170
| | || || | ||||||||| | | |
Sbjct 251549 AACAAGAATTCTTGACCGAGGCTCTTCCTTGTGCACTTCTTGGCATGAACGCGAACTTGA 251490
Query 26171 TGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGAC 26230
||| |||||||| |||| || ||||| | ||| || | || || || |
Sbjct 251489 TGAAGCAATACATCGAGTTCGTCGCCGATCGTCTCCTAGTCGCTCTTGGTAACGAGAAGG 251430
Query 26231 TCTAC-AGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACC 26289
| ||| ||| ||| ||||| |||||||| ||||| ||||| || | | ||| |||||
Sbjct 251429 TGTACAAGTCTGCC-AACCCATTCGACTTCATGGAGAACATCTCCCTAGCAGGCAAGACA 251371
Query 26290 AACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
|||||||| || ||||| || || ||||| ||
Sbjct 251370 AACTTCTTCGAGAAGAGAGTTGGTGACTACCA 251339
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928825793513280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |