Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08- 07] 1,637 sequences; 39,468,807 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq845 138 2e-27 >seq845 Length=273148 Score = 138 bits (152), Expect = 2e-27 Identities = 339/512 (66%), Gaps = 11/512 (2%) Strand=Plus/Minus Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGAT-CAACAGCCAGAGCGCTACGTTT 25872 |||| |||| ||| || ||||| | | ||||| ||| | | | | | |||| ||| Sbjct 251843 GCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGA-CAAAAACTCTACCTTT 251785 Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 | |||| ||||| || ||||||||||| ||||||||||| ||||| || || || || Sbjct 251784 GCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCATTCGCT 251725 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCT 25991 | ||||||||||||||| || || ||| | || || |||||| ||||| ||||| Sbjct 251724 TCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCT-TACTTTCTCCAATGAGCT 251666 Query 25992 CATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTT 26051 |||| | | || || |||||||| | || || || ||||| |||| | | |||||| Sbjct 251665 CATCTCCCGTGATGAAGGTCTCCATACCGACTTCGCGTGCCTCCTCTTCTC---CCACTT 251609 Query 26052 GCTCCACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCG 26110 | ||| || |||| || | ||| | | |||||| ||||||||| ||||||| Sbjct 251608 GAAGCACCGTCC-AAGCAAGCAGGCTGTCCAAGATGTCATCACAGAGGCTGTTGAGATCG 251550 Query 26111 AGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCA 26170 | | || || | ||||||||| | | | Sbjct 251549 AACAAGAATTCTTGACCGAGGCTCTTCCTTGTGCACTTCTTGGCATGAACGCGAACTTGA 251490 Query 26171 TGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGAC 26230 ||| |||||||| |||| || ||||| | ||| || | || || || | Sbjct 251489 TGAAGCAATACATCGAGTTCGTCGCCGATCGTCTCCTAGTCGCTCTTGGTAACGAGAAGG 251430 Query 26231 TCTAC-AGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACC 26289 | ||| ||| ||| ||||| |||||||| ||||| ||||| || | | ||| ||||| Sbjct 251429 TGTACAAGTCTGCC-AACCCATTCGACTTCATGGAGAACATCTCCCTAGCAGGCAAGACA 251371 Query 26290 AACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||||| || ||||| || || ||||| || Sbjct 251370 AACTTCTTCGAGAAGAGAGTTGGTGACTACCA 251339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928825793513280