Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08-
07] 1,637 sequences; 39,468,807 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq329 165 5e-35
seq34 93.3 3e-13
>seq329
Length=307717
Score = 165 bits (182), Expect = 5e-35
Identities = 332/488 (68%), Gaps = 6/488 (1%)
Strand=Plus/Plus
Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451
||||| || ||||| |||||||| || ||||||| || || | ||| |||| || ||
Sbjct 97619 GAAATTATCGCCAACGACCAAGGAAACCGAACAACTCCTTCGTTCGTTGCTTTCACAGAC 97678
Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511
|| |||| ||| || |||||||| || || | |||| || || ||| || ||
Sbjct 97679 ACCGAACGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCTACAAACACA 97738
Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571
| || |||||||| | |||| |||||||| || | || | |||||| |||||
Sbjct 97739 GTCTTCGATGCTAAGCGTCTGATCGGTCGTAAATTCGCCGACCCAGAAGTCCAAGCTGAT 97798
Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AA 474629
||| || | || || ||||| || | ||| || || ||| || |||| |
Sbjct 97799 ATGAAGCACTTCCCATTCAAGGTCATCGACCGTGGCGGAAAGCCAGTCATTGAAGTCGAG 97858
Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689
| || | || || |||| ||||| |||| ||| |||| || || ||||| || | ||
Sbjct 97859 TTCAAG--GGCGAGGCTAAGCAATTCACACCCGAAGAAATCTCCTCGATGGTCTTGGTCA 97916
Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748
| |||| | || || ||| | || || || | || | | || || | |||
Sbjct 97917 AGATGAGGGAGACTGCTGAGGCC-TACCTCGGTGGAACCGTCAACAACGCTGTCGTCACT 97975
Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808
||||||||||| || | || || ||||||||||| || |||||||| || || ||
Sbjct 97976 GTTCCAGCATACTTCACCGACTCCCAACGTCAAGCCACAAAAGATGCAGGTCTCATCGCC 98035
Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868
||||| |||||| | ||||| || || || || || ||||| || ||||||| ||| |
Sbjct 98036 GGTCTCAATGTTCTCCGTATCATCAACGAGCCTACCGCAGCTGCCATTGCTTACGGTTTG 98095
Query 474869 GATAAGAA 474876
|| |||||
Sbjct 98096 GACAAGAA 98103
Score = 111 bits (122), Expect = 1e-18
Identities = 451/700 (64%), Gaps = 23/700 (3%)
Strand=Plus/Plus
Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546
||||| | ||||| || |||||||||||||| | || || || || | || || |
Sbjct 98324 CGTCTCCGCACTGCATGCGAACGTGCTAAGCGTACCCTCTCCTCCTCTGCCCAGACATCC 98383
Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGA-TTATAATACTCTTATTACAAGGGCTAA 475605
| ||| | || ||||| || || || || || || || |||| || || | |||
Sbjct 98384 ATCGAAATCGACTCTCTCTTCGAGGGTATCGACTTCTACACCTCT-ATCACTCGTGCTCG 98442
Query 475606 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCT 475665
|| || || |||| || ||||| || || | | || || || | || ||
Sbjct 98443 TTTCGAGGAACTTTGCCAAGACCTCTTCCGATCCACCACCAACCCAGTCGACCGTGTCCT 98502
Query 475666 CAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAAC 475725
| || | || | |||||||| |||||| || || || | || || ||||| ||
Sbjct 98503 CGCTGACGCCAAGATCGACAAATCCAGAGTCCACGAGATCGTCTTGGTCGGTGGTTCCAC 98562
Query 475726 AAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-----TATTTTAATGGTAAAAAGTTA 475780
| || ||| || |||| ||| ||||| || || || ||||| || |
Sbjct 98563 CCGTATCCCACGTATCC-AGAA--GCT--CATCACCGACTACTTCAACGGTAAGGAGCCA 98617
Query 475781 AATGAAAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTA 475838
|| |||| | || |||||||| ||||||||||| || ||||| ||||| || ||||
Sbjct 98618 AAC--AAGTCCATCAACCCTGATGAGGCTGTTGCATACGGCGCTGCCGTCCAGGCTGCTA 98675
Query 475839 TTTTATCAGGTCAA---TCAGACGAGAAACTA--AATAATATTGTACTTGTTGACGTAAC 475893
| | || ||| | ||| | || ||| || | || | ||| | || || |
Sbjct 98676 TCCTCTCTGGTGACACTTCATCCAAGT--CTACCAACGAGATCCTTCTTCTCGATGTCGC 98733
Query 475894 TCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAA 475953
||| | || | ||| | || || | ||| || ||||| || || ||| || | ||
Sbjct 98734 GCCATTGTCTCTTGGTATCGAGACTGCTGGTGGACAAATGACCAAGCTCATTCACCGCAA 98793
Query 475954 TACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAAC 476013
|| | || || ||| || || |||| || || || | || ||||| ||| |
Sbjct 98794 CACCACCATTCCCACCAAGAAGTCTGAAGTCTTCTCTACCTTCTCCGATAACCAACCTGG 98853
Query 476014 TGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG 476073
||| || ||| |||| || ||||| |||| ||| || || || ||| || ||
Sbjct 98854 TGTCTTGATTCAAGTCTTCGAGGGTGAGAGAACGCGCACAAAGGACAACAACCTTCTCGG 98913
Query 476074 AACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTAC 476133
|| || | || |||||||| |||||||| | || ||||| ||||| || || ||
Sbjct 98914 AAAGTTCGAACTCACTGGTATTCCACCTGCTCCTCGTGGTGTTCCACAAATCGAGGTCAC 98973
Query 476134 TTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173
|| ||||||||||| || ||||| | ||||| |||||
Sbjct 98974 CTTCGATATTGATGCCAACGGTATCATGAATGTCTCTGCT 99013
Score = 105 bits (116), Expect = 4e-17
Identities = 157/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||||||||| || || | || | || || || || || || ||||||| |||||
Sbjct 133620 ACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGT 133679
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|||| ||| || | |||||||||||||| || | || ||||| || || || || ||
Sbjct 133680 TCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACC 133739
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||||||||||||||| |||||| ||||| ||||| | | | | || |||
Sbjct 133740 CTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAA 133799
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||| || || || || | |||||| ||||| || ||
Sbjct 133800 -TGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTG 133838
Score = 102 bits (112), Expect = 5e-16
Identities = 156/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| ||||| || || | ||| ||||| ||||| | || || || | ||||||
Sbjct 133848 ACGGAGACGAAGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGT 133907
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| | ||| ||||||||||| |||||||| ||||||||||| || || || || || ||
Sbjct 133908 GCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACC 133967
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
||||| ||||| |||||| ||| || || || ||||| | | | || | |||
Sbjct 133968 CTCCTTATCTTGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAA 134027
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || ||||| || ||||| ||||| |||||
Sbjct 134028 -TGTGATTGTCTTTCCGGTAAGTGTCTTGACGAAGATTTG 134066
>seq34
Length=307725
Score = 93.3 bits (102), Expect = 3e-13
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677
|| || ||||||||||| || || || | ||||||||| || || |||||||| ||||||
Sbjct 97484 TCCTCGAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTG 97425
Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737
|| || ||||| |||||| ||||||||||||| | |||||||| ||
Sbjct 97424 TCCTGGATCTTGGACTTGACATTGTCAATAGTATCAGAGGACTCGACCTCAAGGGTGATG 97365
Query 480738 GTTTTACCGGTGAGAGTCTTAACGAA 480763
|| || || || || ||||| |||||
Sbjct 97364 GTCTTTCCCGTAAGGGTCTTGACGAA 97339
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268108981127276
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |