Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08-
07] 1,637 sequences; 39,468,807 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq586 168 2e-36
seq845 113 1e-19
seq95 100 8e-16
seq2 100 8e-16
>seq586
Length=108090
Score = 168 bits (186), Expect = 2e-36
Identities = 573/880 (65%), Gaps = 17/880 (2%)
Strand=Plus/Plus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
|||||| ||||| || ||||| || || || |||||||| | ||||| |||||
Sbjct 13276 GTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTT 13335
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
|| |||| || ||||||||||| || ||| |||| |||| ||||| | || ||
Sbjct 13336 GCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGC 13395
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809
|| ||||| ||| || | |||| || || |||| ||| ||||||
Sbjct 13396 CTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTT 13455
Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867
|||||| | ||||| | ||| ||| | || || || || |||| || |||||
Sbjct 13456 CTCATAACTCTCATAGAGAGC-TTC-AAACTCGTCGCCATATACATCAGCCAACCCAGGA 13513
Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATA 155925
|| | || |||||| | || | |||| || | || ||||||| ||| || |
Sbjct 13514 CATTCATTGGGGCACATTAGTGTCCAATCCGCGTT--CTTTTCAACACGCTTCATGAAGA 13571
Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGAC-TCCTCATCGCCGTGA 155984
||| ||| | ||||||||||| || | | | ||| || || | ||||||
Sbjct 13572 GATCCGGAATCCACAAGGCATAGAAAAGATCAC-GGGCGCGGACTTCTTCCTTGCCGTGG 13630
Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044
||||| || || || | ||| || || ||| | || ||||| ||||| | |||
Sbjct 13631 TTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCA 13690
Query 156045 AAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101
|| |||| | |||| ||||| || || || || | |||||| |||||||| ||
Sbjct 13691 AATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACT 13750
Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGA-ATATGCGAACCAG 156159
| |||||| || | || || ||||| | || ||||| || |||| ||||| |||||
Sbjct 13751 CGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGC--ACCAG 13808
Query 156160 ATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGC 156219
| || | | ||||| | || |||||||| || | |||||| || ||| |
Sbjct 13809 TGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCAC 13868
Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGC 156279
|| ||| | |||| ||||||| |||||| ||| || | ||| | || |||
Sbjct 13869 ATGTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGC 13928
Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339
| || | || | | ||||||| |||||| ||| |||||||| | || || | |
Sbjct 13929 ATGATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGA 13988
Query 156340 AATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAA 156399
| || || || |||||| | ||| ||||| | |||| | || |||||||
Sbjct 13989 AGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAA 14048
Query 156400 TACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTC 156459
||| | | || | ||| ||| ||||| ||||| ||| ||| |||||| | ||
Sbjct 14049 TACCAACGGCAACACGCATGATCATTTGCTGTGGACGTTCTGCAACTTTTCCATCGAGTC 14108
Query 156460 GCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499
| |||||||| | || || || || || || ||||| ||
Sbjct 14109 GAAGAAGGTACGATCGCTCGAGGGTCTTGAATCCGAAGTA 14148
>seq845
Length=273148
Score = 113 bits (124), Expect = 1e-19
Identities = 157/220 (71%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496
||||||| ||||| |||||| | ||||||||| | | |||||| || ||||| | |
Sbjct 251849 TTCCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGACAAAAACTCTA 251790
Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556
|||||| ||||| ||||||||||||| || |||||||| || |||||||| | |
Sbjct 251789 CCTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCAT 251730
Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616
|| ||||| || ||||| || |||||||| | | |||| || ||| || || |
Sbjct 251729 TCGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTTACTTTCTCCAATG 251670
Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656
| || || || | || || | || || ||||| || ||
Sbjct 251669 AGCTCATCTCCCGTGATGAAGGTCTCCATACCGACTTCGC 251630
>seq95
Length=128761
Score = 100 bits (110), Expect = 8e-16
Identities = 140/193 (73%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 289027 TTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086
|| |||||||| |||||||| ||||||||||| | ||| |||| | | | ||| || |
Sbjct 61522 TTTCCAACAGCGTCAATTTCATCAATGAAAATGATACATGGAGTACTCTTTCTTGCCGTG 61463
Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146
|| || | || | || | ||||||||||| ||| || ||||||| || ||||| |||
Sbjct 61462 GCGAAAAGATCACGGACTCTGGATGCTCCAACACCTACGAACATTTCGACGAATTCCGAA 61403
Query 289147 --GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204
| || || |||| ||||| || | | ||||| ||| |||| | |||||||| |
Sbjct 61402 CCACTGACAC-TGAA-GAATGGCACCTGGGACTCGCCAGCTGTTGCCTTTGCCAGAAGCG 61345
Query 289205 TCTTACCTGTTCC 289217
| ||||| || ||
Sbjct 61344 TTTTACCGGTACC 61332
>seq2
Length=224947
Score = 100 bits (110), Expect = 8e-16
Identities = 115/152 (76%), Gaps = 6/152 (4%)
Strand=Plus/Plus
Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898
|| || |||||||||||| |||||||| || || || ||||| | |||||| |
Sbjct 17177 TGTGCAATAGTCATACGAGAAGGAATAGCGTGCGGGTTAATGATAAGGTCGGGAACAATG 17236
Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGT--TTCCAATAGTTCCCTTT 251955
|| | | |||||| ||||| |||| || | ||| |||| | || |||||||||||
Sbjct 17237 CCTTGACTAGTGAATGGCATGTCCTGTTGC---ATATATGTGATACCGATAGTTCCCTTC 17293
Query 251956 TGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
||||||||||||||| ||||||||||||||
Sbjct 17294 TGTCCGTGACGAGAAGCAAACTTATCACCAAT 17325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471786730005669
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |