Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08- 07] 1,637 sequences; 39,468,807 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq107 131 2e-24 seq95 111 2e-18 seq845 95.1 1e-13 seq1239 93.3 5e-13 >seq107 Length=187947 Score = 131 bits (144), Expect = 2e-24 Identities = 129/164 (79%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 1592131 GTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCG 1592189 ||||||| | |||| ||| | ||||| ||| | ||||||||| | || || || | Sbjct 165692 GTGGGACCAAAGGTTTATGCAA-GTCGATCAGGATATGCTCTTTGAGCTTATTCTGGCTG 165634 Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 | ||||||||| |||||||| |||| ||||||||||| |||||| |||| ||||| |||| Sbjct 165633 CTAACTACCTCAACATCAAGGCTCTTCTCGATCTTGGCTGCAAGACTGTTGCCAATATGA 165574 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293 |||| |||||| | || || || ||||| ||||| || |||||| Sbjct 165573 TCAAAGGCAAGACTCCAGAAGAAATCCGAAAGACATTCAACATC 165530 >seq95 Length=128761 Score = 111 bits (122), Expect = 2e-18 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || |||||||||||||| ||||| |||| ||||| | || |||||| | || ||||| Sbjct 8424 GCTGCCAACTACCTCGATATCAAAGCTCTCCTCGACGTCGGCTGCAAGACCGTCGCCAAT 8365 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| || || || ||||| ||||| |||||||||| Sbjct 8364 ATGATCAAGGGCAAGTCCCCAGAAGAAATCCGAAAGACATTTAACATCA 8316 >seq845 Length=273148 Score = 95.1 bits (104), Expect = 1e-13 Identities = 168/243 (69%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || | | |||||| ||||| |||||||| | || ||||| Sbjct 251333 GCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATG 251392 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | ||| ||||||| | |||||| ||| ||| || ||||||| Sbjct 251393 TTCTCCATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTTACCAAGAGCGACT 251452 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 || || || |||||||| ||||||||||| || ||| | | ||||||||||| | Sbjct 251453 --AGGAGACGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGCGTTCATGCCAA 251510 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 || || || || | |||| ||| || |||| |||||||| || ||||| || Sbjct 251511 GAAGTGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCAACAGCCTCTGTGA 251570 Query 868929 TGA 868931 ||| Sbjct 251571 TGA 251573 >seq1239 Length=86040 Score = 93.3 bits (102), Expect = 5e-13 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || |||||||||||||| |||||| |||| ||||| | || |||||| |||| ||||| Sbjct 37617 GCTGCCAACTACCTCGAAATCAAGGCTCTCCTCGACGTCGGATGCAAGACTGTTGCCAAT 37558 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||| ||||| ||| | || || || || || |||| || ||||||| Sbjct 37557 ATGATTAAGGGTAAGGCCCCAGAAGAAATTCGAAAGATATTCAACATCA 37509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107004860113929