Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08-
07] 1,637 sequences; 39,468,807 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq107 131 2e-24
seq95 111 2e-18
seq845 95.1 1e-13
seq1239 93.3 5e-13
>seq107
Length=187947
Score = 131 bits (144), Expect = 2e-24
Identities = 129/164 (79%), Gaps = 2/164 (1%)
Strand=Plus/Minus
Query 1592131 GTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCG 1592189
||||||| | |||| ||| | ||||| ||| | ||||||||| | || || || |
Sbjct 165692 GTGGGACCAAAGGTTTATGCAA-GTCGATCAGGATATGCTCTTTGAGCTTATTCTGGCTG 165634
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
| ||||||||| |||||||| |||| ||||||||||| |||||| |||| ||||| ||||
Sbjct 165633 CTAACTACCTCAACATCAAGGCTCTTCTCGATCTTGGCTGCAAGACTGTTGCCAATATGA 165574
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293
|||| |||||| | || || || ||||| ||||| || ||||||
Sbjct 165573 TCAAAGGCAAGACTCCAGAAGAAATCCGAAAGACATTCAACATC 165530
>seq95
Length=128761
Score = 111 bits (122), Expect = 2e-18
Identities = 90/109 (83%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
|| |||||||||||||| ||||| |||| ||||| | || |||||| | || |||||
Sbjct 8424 GCTGCCAACTACCTCGATATCAAAGCTCTCCTCGACGTCGGCTGCAAGACCGTCGCCAAT 8365
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||||||| || || || ||||| ||||| ||||||||||
Sbjct 8364 ATGATCAAGGGCAAGTCCCCAGAAGAAATCCGAAAGACATTTAACATCA 8316
>seq845
Length=273148
Score = 95.1 bits (104), Expect = 1e-13
Identities = 168/243 (69%), Gaps = 4/243 (2%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || || | | |||||| ||||| |||||||| | || |||||
Sbjct 251333 GCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATG 251392
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808
|||||| | ||| ||||||| | |||||| ||| ||| || |||||||
Sbjct 251393 TTCTCCATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTTACCAAGAGCGACT 251452
Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868
|| || || |||||||| ||||||||||| || ||| | | ||||||||||| |
Sbjct 251453 --AGGAGACGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGCGTTCATGCCAA 251510
Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928
|| || || || | |||| ||| || |||| |||||||| || ||||| ||
Sbjct 251511 GAAGTGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCAACAGCCTCTGTGA 251570
Query 868929 TGA 868931
|||
Sbjct 251571 TGA 251573
>seq1239
Length=86040
Score = 93.3 bits (102), Expect = 5e-13
Identities = 86/109 (79%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
|| |||||||||||||| |||||| |||| ||||| | || |||||| |||| |||||
Sbjct 37617 GCTGCCAACTACCTCGAAATCAAGGCTCTCCTCGACGTCGGATGCAAGACTGTTGCCAAT 37558
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||| ||||| ||| | || || || || || |||| || |||||||
Sbjct 37557 ATGATTAAGGGTAAGGCCCCAGAAGAAATTCGAAAGATATTCAACATCA 37509
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107004860113929
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |