Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08-
07] 1,637 sequences; 39,468,807 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq107 134 1e-26
seq329 104 2e-17
seq34 93.3 4e-14
>seq107
Length=187947
Score = 134 bits (148), Expect = 1e-26
Identities = 169/232 (73%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | ||||| || || |||||||| || || ||||| || ||| || |
Sbjct 35264 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 35205
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || |||||||| ||||| || ||||| || || |||||
Sbjct 35204 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 35145
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|||||| ||||||| ||||| || || || || ||| | | | | || || || |||
Sbjct 35144 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 35085
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAA 24935
|| ||||||||||| || || |||||||| | || | || || |||||||
Sbjct 35084 ATCCAAAAGGAATCCACTCTTCACTTGGTCCTTCGTCTACGTGGTGGCGGAA 35033
>seq329
Length=307717
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || | || || || || ||||| | ||||| ||| | |
Sbjct 133841 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACATTGGAAGTGGAATCGTCA 133782
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || |||||| |||||||| || || || || || || |||
Sbjct 133781 GATACCATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCGGACCAA 133722
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || ||||||||||| || || ||| |||||||| |||| | || ||||| |||
Sbjct 133721 CAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTACAAC 133662
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913
||||| ||||| || | |||||||||
Sbjct 133661 ATTCAGAAGGAGAGCACTTTGCACTTGGTG 133632
Score = 100 bits (110), Expect = 3e-16
Identities = 139/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778
|| || || || || || || || || || || || || | ||||||| | || |
Sbjct 134282 AAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCGACAAT 134223
Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838
|| || |||||||| ||||| || || || ||||| ||||||||||||||||||||
Sbjct 134222 GTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGATCTTC 134163
Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898
|| || ||||| || || ||| | | | || || || ||||| ||||| |||||
Sbjct 134162 GCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAGAATCC 134103
Query 24899 ACACTACACTTGGTG 24913
|| || |||||||||
Sbjct 134102 ACCCTTCACTTGGTG 134088
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | || || || ||||| || || || || | || || || | |
Sbjct 134069 ATGCAAATCTTCGTCAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCA 134010
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || ||| |||||||||||| || || || || || || || ||
Sbjct 134009 GATACCATCGACAACGTGAAATCAAAGATCCAAGATAAGGAGGGTATCCCACCGGACCAG 133950
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|||||| | |||||||| || || || || |||||| | | | ||||| || |||
Sbjct 133949 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAAC 133890
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912
|| || || || || ||||| || |||||
Sbjct 133889 ATCCAGAAAGAGTCCACACTGCATTTGGT 133861
>seq34
Length=307725
Score = 93.3 bits (102), Expect = 4e-14
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
|||||||| ||||| || ||||| || || || ||||||||||||||||| ||||| ||
Sbjct 97414 AAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAACGTTTGATCTTCGCCGGAAAG 97473
Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGG 24893
|| || ||||| ||| | | ||||| || |||||||||||||
Sbjct 97474 CAACTCGAGGACGGACGAACCCTTTCAGACTACAACATTCAAAAGG 97519
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449888393970360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |