Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08- 07] 1,637 sequences; 39,468,807 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq107 134 9e-27 seq34 122 6e-23 seq329 104 2e-17 >seq107 Length=187947 Score = 134 bits (148), Expect = 9e-27 Identities = 162/218 (74%), Gaps = 8/218 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| ||| ||||| || ||||| ||||| || ||| |||| |||| Sbjct 35053 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 35112 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| |||||||||||||| |||||||| || | || | ||||||||||| Sbjct 35113 TCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCC 35172 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| ||| || || || || | ||| || Sbjct 35173 TGGATCTTGGACTTGAC--AT--TGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGAT 35228 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGA 34979 ||| || ||||||||||| || || ||||||||||||| Sbjct 35229 GGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCATGA 35266 >seq34 Length=307725 Score = 122 bits (134), Expect = 6e-23 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||| |||||||| ||||| || ||| | || | || || ||||||||||||||||||| Sbjct 97519 CCTTTTGAATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGA 97460 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| ||||| ||||| | || | ||||||||||| | || || ||||| Sbjct 97459 TCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 97400 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | || | ||| || |||||| |||| ||| |||||||||||||| |||||||| || | Sbjct 97399 CAATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGA 97340 Query 34968 AG 34969 || Sbjct 97339 AG 97338 >seq329 Length=307717 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| || | ||| ||| ||||| ||||| ||||| ||||| |||| |||| Sbjct 133858 AGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCC 133917 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || || ||||| || ||||||||||| | || | |||||||| || Sbjct 133918 TCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCT 133977 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| ||| ||| | || | || | ||| || || | || || ||| Sbjct 133978 TGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTC 134037 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || ||||| || ||||| ||||| Sbjct 134038 TTTCCGGTAAGTGTCTTGACGAAGATTTGCAT 134069 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | |||||||||||||||||||| || || || || | | |||| Sbjct 133630 AGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCC 133689 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||||| || ||||||| ||| || ||||| | || | ||||||||||| Sbjct 133690 TCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCT 133749 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| ||||| | || | || | || || || | || |||||| Sbjct 133750 TGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTC 133809 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | ||||| || ||||||||||| Sbjct 133810 TTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 133841 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| |||| || || || ||||| ||||| ||| |||| |||| Sbjct 134086 AGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCT 134145 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || || |||||||||| ||||| || || | || | ||||||||||| Sbjct 134146 TCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTCC 134205 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || | |||||| |||| || || Sbjct 134206 TGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGAT 134261 Query 34942 GGTCTTTCCCGTGAGGGTCTTTAC 34965 |||||| || ||||| ||||| || Sbjct 134262 GGTCTTGCCAGTGAGAGTCTTGAC 134285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325686302123303