Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08-
07] 1,637 sequences; 39,468,807 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq107 134 9e-27
seq34 122 6e-23
seq329 104 2e-17
>seq107
Length=187947
Score = 134 bits (148), Expect = 9e-27
Identities = 162/218 (74%), Gaps = 8/218 (4%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| ||||| ||| ||||| || ||||| ||||| || ||| |||| ||||
Sbjct 35053 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 35112
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| |||||||| |||||||||||||| |||||||| || | || | |||||||||||
Sbjct 35113 TCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCC 35172
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||||| || | ||||| ||| || || || || | ||| ||
Sbjct 35173 TGGATCTTGGACTTGAC--AT--TGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGAT 35228
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGA 34979
||| || ||||||||||| || || |||||||||||||
Sbjct 35229 GGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCATGA 35266
>seq34
Length=307725
Score = 122 bits (134), Expect = 6e-23
Identities = 136/182 (75%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
|||| |||||||| ||||| || ||| | || | || || |||||||||||||||||||
Sbjct 97519 CCTTTTGAATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGA 97460
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
||| ||||| ||||| | || | ||||||||||| | || || |||||
Sbjct 97459 TCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 97400
Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967
| || | ||| || |||||| |||| ||| |||||||||||||| |||||||| || |
Sbjct 97399 CAATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGA 97340
Query 34968 AG 34969
||
Sbjct 97339 AG 97338
>seq329
Length=307717
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| || | ||| ||| ||||| ||||| ||||| ||||| |||| ||||
Sbjct 133858 AGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCC 133917
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| |||||||| || || ||||| || ||||||||||| | || | |||||||| ||
Sbjct 133918 TCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCT 133977
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || ||| ||| ||| | || | || | ||| || || | || || |||
Sbjct 133978 TGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTC 134037
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || || ||||| || ||||| |||||
Sbjct 134038 TTTCCGGTAAGTGTCTTGACGAAGATTTGCAT 134069
Score = 98.7 bits (108), Expect = 6e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | |||||||||||||||||||| || || || || | | ||||
Sbjct 133630 AGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCC 133689
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| |||||||| || ||||||| ||| || ||||| | || | |||||||||||
Sbjct 133690 TCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCT 133749
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || ||| ||||| | || | || | || || || | || ||||||
Sbjct 133750 TGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTC 133809
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || | ||||| || |||||||||||
Sbjct 133810 TTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 133841
Score = 82.4 bits (90), Expect = 5e-11
Identities = 142/204 (70%), Gaps = 8/204 (4%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||||| |||| || || || ||||| ||||| ||| |||| ||||
Sbjct 134086 AGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCT 134145
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| ||||| || || |||||||||| ||||| || || | || | |||||||||||
Sbjct 134146 TCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTCC 134205
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||||| || | ||||| || | |||||| |||| || ||
Sbjct 134206 TGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGAT 134261
Query 34942 GGTCTTTCCCGTGAGGGTCTTTAC 34965
|||||| || ||||| ||||| ||
Sbjct 134262 GGTCTTGCCAGTGAGAGTCTTGAC 134285
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325686302123303
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |