Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08- 07] 1,637 sequences; 39,468,807 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq586 181 3e-40 seq845 118 3e-21 >seq586 Length=108090 Score = 181 bits (200), Expect = 3e-40 Identities = 381/562 (68%), Gaps = 7/562 (1%) Strand=Plus/Minus Query 110520 TCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAA 110579 || ||||| || | | || || || ||| |||||| |||||||||||| | || || Sbjct 13932 TCATGCTTCCTCATTGATATGAAGGAGGATAGTATTGATGGTATTTATGATACCCTCAAG 13873 Query 110580 GAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGC 110639 | |||| | || |||||||| ||||||| |||||| | || |||| || || Sbjct 13872 ACATGTGCTATGATCTCTAAAAATGCTGGAGGTATTGGTCTCAACATTCACAGAATCCGT 13813 Query 110640 TCAAAAGGAGCAAATATCGCAACAGCGAAGGGTG-CTTCAACTGGACTTGTTCCAATGTT 110698 | | || ||| | ||||| | || ||| || |||| | | | || || ||| | Sbjct 13812 GCCACTGGTGCATACATCGCCGGTACCAACGGTAACTCCAACGGCA-TCGTACCGATGCT 13754 Query 110699 AAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA---GAAATGGCTC 110755 | |||| ||||| ||||||| | ||| || | |||||||| || | | ||| | Sbjct 13753 ACGAGTTTTCAATAACACTGCTAGATACGTCGACCAAGGTGGAAACAAGCGTCCTGGTGC 13694 Query 110756 ATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAA 110815 |||||| ||||||| || |||||||| ||||| | || || ||| | || || || || Sbjct 13693 ATTTGCAGTCTATCTTGAGCCTTGGCACGCAGATGTTTTCGAGTTCCTGGACCTCCGAAA 13634 Query 110816 AAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGA 110875 || || || |||||| | || |||||| | || ||||| |||||||| | || Sbjct 13633 GAACCACGGCAAGGAAGAAGTCCGCGCCCGTGATCTTTTCTATGCCTTGTGGATTCCGGA 13574 Query 110876 TTTATTCATGAAACGTGTTCAAGAAAATG-GCATGTGGTCTCTTATGTGTCCTCATCGTT 110934 | | |||||||| |||||| || | || | | || ||| | || ||||| || || | Sbjct 13573 TCTCTTCATGAAGCGTGTTGAAAAGAACGCGGAT-TGGACACTAATGTGCCCCAATGAAT 13515 Query 110935 CTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAA 110994 |||||| | ||||||||||||| | |||||||||| || || || | ||||| | Sbjct 13514 GTCCTGGGTTGGCTGATGTATATGGCGACGAGTTTGAAGCTCTCTATGAGAGTTATGAGA 13455 Query 110995 AAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAAT 111054 | ||||| | |||||| || ||| ||| | ||||||| | || || || Sbjct 13454 AGGAAGGTAGAGGTCGCAAGACCATCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGG 13395 Query 111055 CACAAGTTGAAACTGGAACTcc 111076 | ||| ||| || |||| ||| Sbjct 13394 CTCAAACTGAGACCGGAAATCC 13373 >seq845 Length=273148 Score = 118 bits (130), Expect = 3e-21 Identities = 158/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846 ||||| ||||| |||||||| || |||||| | | |||||||||||| | | ||| Sbjct 251849 TTCCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGACAAAAACTCTA 251790 Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906 ||| || | || || ||||||||| |||||| || || ||||| || | | Sbjct 251789 CCTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCAT 251730 Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966 || | ||||||| ||||| ||||||||||| |||||| |||| || | || |||||| Sbjct 251729 TCGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTTACTTTCTCCAATG 251670 Query 131967 AATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGC 132006 | ||||||| | ||||||| | ||||| || || || Sbjct 251669 AGCTCATCTCCCGTGATGAAGGTCTCCATACCGACTTCGC 251630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186787907714157