Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08-
07] 1,637 sequences; 39,468,807 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq329 122 8e-23
seq107 95.1 1e-14
seq34 84.2 2e-11
>seq329
Length=307717
Score = 122 bits (134), Expect = 8e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586
|||||| || || || |||||||| |||||||||||||| | | |||| | || ||
Sbjct 133632 CACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTC 133691
Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646
|| |||||| || ||||| ||||| ||||| ||||||| || | | |||||||||
Sbjct 133692 CAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTG 133751
Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706
|||||| ||| | | | | | || || ||||||||| |||| || || || ||
Sbjct 133752 AATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTT 133811
Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| |||||||| || || || ||||||||
Sbjct 133812 TCCAGTCAAAGTCTTGACGAAGATCTGCAT 133841
Score = 86.0 bits (94), Expect = 6e-12
Identities = 122/169 (72%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||||||||||||||| ||| |||||| || | || || || || || || || ||
Sbjct 134386 CTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCTTCAAGTTGTTTGCCTGCGAA 134445
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| ||||| ||||||| |||| | |||||| ||| ||||| ||| | ||
Sbjct 134446 GATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGAATCTTGCTCTTTA-CGT 134504
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712
|| | | || ||||| || || ||||| | ||||| || || || ||
Sbjct 134505 TGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 134553
>seq107
Length=187947
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||||| | | ||||| || | || |||||||| |||||||| ||||
Sbjct 35038 CCACCACGTAGACGAAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAA 35097
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| ||| || | || || || ||||| || || || |||| || ||||| || | ||
Sbjct 35098 AGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGG 35157
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | |||||||||| |||||| ||| | | | | | || || ||||| |||
Sbjct 35158 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACC 35217
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | ||||| ||||||||||| | ||||| || || ||||||||
Sbjct 35218 TCGAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 35264
>seq34
Length=307725
Score = 84.2 bits (92), Expect = 2e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606
|||||||||||||||| || | | |||||| |||| || || ||||| || || || |
Sbjct 97519 CCTTTTGAATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGA 97460
Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652
|||| || || ||||||| |||| | |||||||||| ||||||
Sbjct 97459 TCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTT 97414
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450784375635960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |