Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08-
07] 1,637 sequences; 39,468,807 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq586 214 2e-50
>seq586
Length=108090
Score = 214 bits (236), Expect = 2e-50
Identities = 940/1469 (64%), Gaps = 49/1469 (3%)
Strand=Plus/Plus
Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766
||||||||| | ||||||||||||||||| || || ||| | ||||| | ||||
Sbjct 12703 GTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCGAGAATTTGAGAGGTGCT 12762
Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826
|||||||||||| || || | | | |||||| || | ||| | | |||||| ||
Sbjct 12763 GGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACCGTGTTGTTTGATGGATTT 12822
Query 110827 CTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGAA 110885
||| | ||||||||| | | | | ||| | || | ||||||| || | ||||
Sbjct 12823 CTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAAC-TCCCCACATATCGTATTGAA 12881
Query 110886 GCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA 110945
| | || | || | || || || || |||| ||||||| ||| | | ||| |
Sbjct 12882 GTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTCATAGGTACCCAACTCCTTAGCAA 12941
Query 110946 ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCT 111005
||| | || || | ||||| || || ||||| ||||| || || | |
Sbjct 12942 TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTCGAAGATTTGAATGTTGAGGT 13001
Query 111006 CCTTGGCTTCATCTGAATCAAATG-----CGTAGCGGCACAAAATAAATACATCCGCGAG 111060
|||||||||| ||| ||||||| || || | || |||| |||| || ||
Sbjct 13002 GCTTGGCTTCAGGTGATTCAAATGGTAATCGAAGAGCCAAAAAAG-----CATCGGCAAG 13056
Query 111061 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-A 111119
|||||||||||| | | | ||||||| || || | ||| ||||| || ||| |
Sbjct 13057 ACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGGCC-TCTGGGA 13115
Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179
|||| || | || ||||||||| ||| | ||| || ||| | | || | |
Sbjct 13116 CGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGACAACGACTTGAGTAACCT 13175
Query 111180 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTC-TTCATTG--ACATACTTTGGAAGGG 111236
| ||||| |||| |||| |||| | ||| ||||| ||| | |||| || |
Sbjct 13176 CGTGAAGCTTTTGGAAATCGTAAGTTCC---CTCATTCATGTCCACAAATGTTGGGAGAG 13232
Query 111237 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTG 111296
| || || ||||| || || ||| ||||| | | ||| || | ||||||||
Sbjct 13233 CAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTATTCGACAATTTCTG 13292
Query 111297 TACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACG 111356
| || || ||||| || ||| || || | ||||||||||| |||||||||||||| |
Sbjct 13293 TGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCTTCTTGTTGCATG 13352
Query 111357 CATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCC 111416
|||||||||| |||||| | || | || ||||| || || | | |||||| | | ||
Sbjct 13353 CATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCTCGAGAATGGAGTACC 13412
Query 111417 AAACATCGGCGGCTGGTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGT 111473
||| | ||| | |||| ||| | | || ||| ||| || | |
Sbjct 13413 AAAGCTTTTGGGC---TTTGATGGTCTTGCGACCTCTACCTTCCTTCTCATAACTCTCAT 13469
Query 111474 AGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGG---TGCCTTGTCTGGAC 111530
|||| ||||||||||| || || | || | | || || | | ||| || |
Sbjct 13470 AGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGACATTCATTG---GGGC 13526
Query 111531 AGAAAAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 111588
| | || | ||| | || | ||| ||||| ||||||||||| || || ||||||||
Sbjct 13527 ACATTAGTGTCCAAT--CCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAATCCA 13584
Query 111589 CAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTC 111648
|| || | || ||||| | || | ||||| | || ||||| ||| | ||
Sbjct 13585 CAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTTCTTTCGGAGGTC 13644
Query 111649 AAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG 111708
|||||||| | | ||| |||||||| ||||||||||||||||| | || | |
Sbjct 13645 CAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGC---AAATGCACCAGG 13701
Query 111709 ACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 111762
|||| ||| |||| | || || | || ||| || || || || ||||| ||
Sbjct 13702 ACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCGTAGCATCGG 13761
Query 111763 AATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATC 111822
| || || | || | ||| || || || || | | |||| | |
Sbjct 13762 TACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCACGGATTCT 13821
Query 111823 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 111882
|| |||| | |||||||| ||||| || ||||| ||||| | | || ||
Sbjct 13822 GTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCTTGAGGGT 13881
Query 111883 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 111942
|||| ||||| | || |||||||| | | || |||||||| || | |||
Sbjct 13882 ATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGATGAAAGCTG 13941
Query 111943 CGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGG 112001
| | |||||||||||| ||| || || || | ||||| |||| || | | ||
Sbjct 13942 TGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA-GTATTTGTTGG 14000
Query 112002 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGA 112061
|||| || ||| ||||| | | | || || || || ||||| || || | || |
Sbjct 14001 ACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAATACCAACGGCAA 14060
Query 112062 CCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-G 112120
| ||||||| ||| | |||||| ||| | | |||||||| || |||| || |
Sbjct 14061 CACGCATGATCATTTGCTGTGGACGTTCTGCAACTTTTCCATCGAGTCGAAGAAGGTACG 14120
Query 112121 CTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149
|| ||| ||||| |||| || |||||
Sbjct 14121 ATC-GCTCGAGGGTCTTGAATCCGAAGTA 14148
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628019148895200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |