Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08- 07] 1,637 sequences; 39,468,807 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq586 214 2e-50 >seq586 Length=108090 Score = 214 bits (236), Expect = 2e-50 Identities = 940/1469 (64%), Gaps = 49/1469 (3%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | ||||||||||||||||| || || ||| | ||||| | |||| Sbjct 12703 GTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCGAGAATTTGAGAGGTGCT 12762 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 |||||||||||| || || | | | |||||| || | ||| | | |||||| || Sbjct 12763 GGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACCGTGTTGTTTGATGGATTT 12822 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGAA 110885 ||| | ||||||||| | | | | ||| | || | ||||||| || | |||| Sbjct 12823 CTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAAC-TCCCCACATATCGTATTGAA 12881 Query 110886 GCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA 110945 | | || | || | || || || || |||| ||||||| ||| | | ||| | Sbjct 12882 GTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTCATAGGTACCCAACTCCTTAGCAA 12941 Query 110946 ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCT 111005 ||| | || || | ||||| || || ||||| ||||| || || | | Sbjct 12942 TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTCGAAGATTTGAATGTTGAGGT 13001 Query 111006 CCTTGGCTTCATCTGAATCAAATG-----CGTAGCGGCACAAAATAAATACATCCGCGAG 111060 |||||||||| ||| ||||||| || || | || |||| |||| || || Sbjct 13002 GCTTGGCTTCAGGTGATTCAAATGGTAATCGAAGAGCCAAAAAAG-----CATCGGCAAG 13056 Query 111061 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-A 111119 |||||||||||| | | | ||||||| || || | ||| ||||| || ||| | Sbjct 13057 ACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGGCC-TCTGGGA 13115 Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179 |||| || | || ||||||||| ||| | ||| || ||| | | || | | Sbjct 13116 CGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGACAACGACTTGAGTAACCT 13175 Query 111180 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTC-TTCATTG--ACATACTTTGGAAGGG 111236 | ||||| |||| |||| |||| | ||| ||||| ||| | |||| || | Sbjct 13176 CGTGAAGCTTTTGGAAATCGTAAGTTCC---CTCATTCATGTCCACAAATGTTGGGAGAG 13232 Query 111237 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTG 111296 | || || ||||| || || ||| ||||| | | ||| || | |||||||| Sbjct 13233 CAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTATTCGACAATTTCTG 13292 Query 111297 TACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACG 111356 | || || ||||| || ||| || || | ||||||||||| |||||||||||||| | Sbjct 13293 TGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCTTCTTGTTGCATG 13352 Query 111357 CATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCC 111416 |||||||||| |||||| | || | || ||||| || || | | |||||| | | || Sbjct 13353 CATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCTCGAGAATGGAGTACC 13412 Query 111417 AAACATCGGCGGCTGGTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGT 111473 ||| | ||| | |||| ||| | | || ||| ||| || | | Sbjct 13413 AAAGCTTTTGGGC---TTTGATGGTCTTGCGACCTCTACCTTCCTTCTCATAACTCTCAT 13469 Query 111474 AGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGG---TGCCTTGTCTGGAC 111530 |||| ||||||||||| || || | || | | || || | | ||| || | Sbjct 13470 AGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGACATTCATTG---GGGC 13526 Query 111531 AGAAAAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 111588 | | || | ||| | || | ||| ||||| ||||||||||| || || |||||||| Sbjct 13527 ACATTAGTGTCCAAT--CCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAATCCA 13584 Query 111589 CAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTC 111648 || || | || ||||| | || | ||||| | || ||||| ||| | || Sbjct 13585 CAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTTCTTTCGGAGGTC 13644 Query 111649 AAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG 111708 |||||||| | | ||| |||||||| ||||||||||||||||| | || | | Sbjct 13645 CAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGC---AAATGCACCAGG 13701 Query 111709 ACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 111762 |||| ||| |||| | || || | || ||| || || || || ||||| || Sbjct 13702 ACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCGTAGCATCGG 13761 Query 111763 AATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATC 111822 | || || | || | ||| || || || || | | |||| | | Sbjct 13762 TACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCACGGATTCT 13821 Query 111823 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 111882 || |||| | |||||||| ||||| || ||||| ||||| | | || || Sbjct 13822 GTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCTTGAGGGT 13881 Query 111883 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 111942 |||| ||||| | || |||||||| | | || |||||||| || | ||| Sbjct 13882 ATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGATGAAAGCTG 13941 Query 111943 CGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGG 112001 | | |||||||||||| ||| || || || | ||||| |||| || | | || Sbjct 13942 TGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA-GTATTTGTTGG 14000 Query 112002 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGA 112061 |||| || ||| ||||| | | | || || || || ||||| || || | || | Sbjct 14001 ACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAATACCAACGGCAA 14060 Query 112062 CCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-G 112120 | ||||||| ||| | |||||| ||| | | |||||||| || |||| || | Sbjct 14061 CACGCATGATCATTTGCTGTGGACGTTCTGCAACTTTTCCATCGAGTCGAAGAAGGTACG 14120 Query 112121 CTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 || ||| ||||| |||| || ||||| Sbjct 14121 ATC-GCTCGAGGGTCTTGAATCCGAAGTA 14148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628019148895200