Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08- 07] 1,637 sequences; 39,468,807 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq586 241 1e-58 seq845 116 4e-21 >seq586 Length=108090 Score = 241 bits (266), Expect = 1e-58 Identities = 687/1039 (66%), Gaps = 38/1039 (4%) Strand=Plus/Plus Query 78872 CATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGG 78931 ||||||| || || || || |||| |||||| ||||| || || | |||||||||| || Sbjct 13047 CATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGG 13106 Query 78932 CCGCCTCGGTCGGG-TAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACC 78990 || | | || |||| || |||| || |||| ||||| ||| | ||||| Sbjct 13107 CCTC-TGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGACAACGACT 13165 Query 78991 CGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCT--TTGATG------AAAG 79042 |||| ||||||| | || |||||| || || ||| || ||| || | Sbjct 13166 TGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAG--TTCCCTCATTCATGTCCACAAATG 13223 Query 79043 TCGGTAG-GCACAGCGATGCCAGGTTGCA-CACGGCCGTCT-CGTCCGGGCTAGAAACCT 79099 | || || ||| | || |||| ||| || || | || || | || ||| ||| | Sbjct 13224 TTGGGAGAGCAATG-GAAGCCAAGTTACAGCAAG--CGACTTCATCTGGGGCAGAGTATT 13280 Query 79100 CGATGATTTCTGTGCACAAATTAGA----CGACTTGATGGTGCCGATGTTCTTCTGGTTG 79155 ||| ||||||||||||||||| || ||| |||||||||| |||||| |||||| Sbjct 13281 CGACAATTTCTGTGCACAAATTGGAGCTGCGA----ATGGTGCCGAGGTTCTTTTGGTTG 13336 Query 79156 CTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTC 79215 ||||||| ||| || || |||||||| |||| | || | ||||||||| ||| | Sbjct 13337 CTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCC 13396 Query 79216 TTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTT----CTTGTACCGACCCTG 79271 | ||||| | || ||| | | |||| || ||| | | |||| || | Sbjct 13397 TCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTTC 13456 Query 79272 TGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGG 79331 | | || || || | | | || | || ||||| ||||| | || || || Sbjct 13457 T----CATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGG 13512 Query 79332 GCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAG 79391 || || | |||||||| || ||| ||| ||| ||| ||||| || ||||||||| Sbjct 13513 ACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAG 13572 Query 79392 GTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTT 79451 ||||| ||||||| ||| ||| || || ||| || | || || | ||| ||||| Sbjct 13573 ATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTT 13632 Query 79452 CAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAA 79511 | || || || || || || | | || |||||||| ||||| ||||||| || || Sbjct 13633 CTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAA 13692 Query 79512 CGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCG 79571 | ||| |||||| || || |||| |||||| | || ||||| ||||||||||| Sbjct 13693 TGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCG 13752 Query 79572 GAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGC 79631 ||||| || |||||||||| || | ||||| || ||| ||| || ||| | || Sbjct 13753 TAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGC 13812 Query 79632 CCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACT 79690 || || | | | | || || || || || || | || ||||| || || Sbjct 13813 ACGGAT-TCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATG 13871 Query 79691 CCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGC 79750 |||||| || || || || || || || || ||||||||| | | |||||||| Sbjct 13872 TCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATG 13931 Query 79751 TCGACATCTGTGGGTTGT-TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAG 79809 || | |||| | |||| ||||| ||| ||| || || || | ||||| |||||| Sbjct 13932 ATGAAAGCTGT-GCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAG 13990 Query 79810 AACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATG 79869 | || | | ||| || | ||| ||||| || ||| | || ||||| ||||| || Sbjct 13991 TATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAATA 14050 Query 79870 CCGACCGCGACGCGCATGA 79888 || || || || ||||||| Sbjct 14051 CCAACGGCAACACGCATGA 14069 Score = 172 bits (190), Expect = 6e-38 Identities = 396/591 (67%), Gaps = 4/591 (1%) Strand=Plus/Minus Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACG 19175 ||||||| || || || || || || || ||||| || | | | | ||||| ||| Sbjct 14069 TCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGCGCCATTGAGACCTACA 14010 Query 19176 ACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGA 19235 |||| ||| | | || | |||||| ||||| | || || |||||| ||| ||||| Sbjct 14009 ACCTTATGTCCAACAAATACTTCACACACGCCTCCCCTACACTTTTCTCCGCTGGTACAC 13950 Query 19236 -ACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGC 19294 |||| | ||| | || || ||||| | | ||||||||| || || ||||| || Sbjct 13949 CACAAGCA-CAGCTTTCATCATGCTTCCTCATTGATATGAAGGAGGATAGTATTGATGGT 13891 Query 19295 ATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATC 19354 || || || || |||||| || || ||||| || | || ||||| || || Sbjct 13890 ATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGGAGGTATTGGTCTC 13831 Query 19355 CAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGA 19413 || | | | | ||||| | | |||| || ||| || || ||||| || | Sbjct 13830 AACATTCACAGA-ATCCGTGCCACTGGTGCATACATCGCCGGTACCAACGGTAACTCCAA 13772 Query 19414 CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGG 19473 ||| ||||| || ||||| || || ||||| ||||| || || |||||| |||| || || Sbjct 13771 CGGCATCGTACCGATGCTACGAGTTTTCAATAACACTGCTAGATACGTCGACCAAGGTGG 13712 Query 19474 CGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGA 19533 ||| || || | || || |||| || ||||| |||||||| || || | || Sbjct 13711 AAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTGGCACGCAGATGTTTTCGA 13652 Query 19534 TTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCAC 19593 ||||| || || || |||||| || | || || | ||| || || || ||| Sbjct 13651 GTTCCTGGACCTCCGAAAGAACCACGGCAAGGAAGAAGTCCGCGCCCGTGATCTTTTCTA 13592 Query 19594 GGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCT 19653 ||||||||||||||||| || |||||| || ||||| ||| ||| || ||| || Sbjct 13591 TGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCGGATTGGACACT 13532 Query 19654 GATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTT 19704 |||||||| | ||||| ||||| | | || || || ||||| | ||| Sbjct 13531 AATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATATGGCGACGAGTT 13481 >seq845 Length=273148 Score = 116 bits (128), Expect = 4e-21 Identities = 310/460 (67%), Gaps = 28/460 (6%) Strand=Plus/Minus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031 ||||| || ||||| | |||||||| ||| || || || ||||||||| ||| || || Sbjct 251787 TTTGCTCAGCGTCTGGTTGCTTTTGC-TGCTGTTGAGGGCATCTTCTTCAGTGGATCATT 251729 Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091 | | |||| ||||||||||| ||||||||| | ||| | || || | ||||||||| || Sbjct 251728 CGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTTACTTTCTCCAATGA 251669 Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCT 60151 ||| || ||||| || || || |||||| || || || ||| | | || ||| | || Sbjct 251668 GCTCATCTCCCGTGATGAAGGTCTCCATACCGACTTCGC-GTGCCTC-CTCTTCTC-CCA 251612 Query 60152 ATTGGAAAAATGCCCTTCCAAGGA-TATTCACAAGAT-TGTTCAGTG-GGCTTGTGAAGT 60208 ||| | | | || |||| | | |||||| | ||| | |||| ||| | Sbjct 251611 CTTGAAGCACCGTCCAAGCAAGCAGGCTGTCCAAGATGTCATCACAGAGGCTGTTGAGAT 251552 Query 60209 GGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGA 60268 || || ||| | || || || ||||| || ||| | || ||| |||| || Sbjct 251551 CGAACAAGAATTCTTGACCGAGGCTCTTCCTTGTGCACTTCTTGGCATGAACGC----GA 251496 Query 60269 A----ATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTG-----G 60319 | |||| ||| ||||| |||| ||||| || || ||| | | | ||| | Sbjct 251495 ACTTGATGAAGCAATACATCGAGTTCGTCGCCGATCGTCTCCTAGTCGCTCTTGGTAACG 251436 Query 60320 AGAAGGACCAATTTAC-GGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGG 60378 |||||| | ||| | || ||||| ||||||| ||||||| |||||| | | Sbjct 251435 AGAAGG-----TGTACAAGTCTG-CCAACCCATTCGACTTCATGGAGAACATCTCCCTAG 251382 Query 60379 AAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||| ||||| |||||||| |||||| | || || || || Sbjct 251381 CAGGCAAGACAAACTTCTTCGAGAAGAGAGTTGGTGACTA 251342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548513575811280