Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08-
07] 1,637 sequences; 39,468,807 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq586 241 1e-58
seq845 116 4e-21
>seq586
Length=108090
Score = 241 bits (266), Expect = 1e-58
Identities = 687/1039 (66%), Gaps = 38/1039 (4%)
Strand=Plus/Plus
Query 78872 CATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGG 78931
||||||| || || || || |||| |||||| ||||| || || | |||||||||| ||
Sbjct 13047 CATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGG 13106
Query 78932 CCGCCTCGGTCGGG-TAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACC 78990
|| | | || |||| || |||| || |||| ||||| ||| | |||||
Sbjct 13107 CCTC-TGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGACAACGACT 13165
Query 78991 CGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCT--TTGATG------AAAG 79042
|||| ||||||| | || |||||| || || ||| || ||| || |
Sbjct 13166 TGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAG--TTCCCTCATTCATGTCCACAAATG 13223
Query 79043 TCGGTAG-GCACAGCGATGCCAGGTTGCA-CACGGCCGTCT-CGTCCGGGCTAGAAACCT 79099
| || || ||| | || |||| ||| || || | || || | || ||| ||| |
Sbjct 13224 TTGGGAGAGCAATG-GAAGCCAAGTTACAGCAAG--CGACTTCATCTGGGGCAGAGTATT 13280
Query 79100 CGATGATTTCTGTGCACAAATTAGA----CGACTTGATGGTGCCGATGTTCTTCTGGTTG 79155
||| ||||||||||||||||| || ||| |||||||||| |||||| ||||||
Sbjct 13281 CGACAATTTCTGTGCACAAATTGGAGCTGCGA----ATGGTGCCGAGGTTCTTTTGGTTG 13336
Query 79156 CTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTC 79215
||||||| ||| || || |||||||| |||| | || | ||||||||| ||| |
Sbjct 13337 CTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCC 13396
Query 79216 TTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTT----CTTGTACCGACCCTG 79271
| ||||| | || ||| | | |||| || ||| | | |||| || |
Sbjct 13397 TCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTTC 13456
Query 79272 TGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGG 79331
| | || || || | | | || | || ||||| ||||| | || || ||
Sbjct 13457 T----CATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGG 13512
Query 79332 GCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAG 79391
|| || | |||||||| || ||| ||| ||| ||| ||||| || |||||||||
Sbjct 13513 ACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAG 13572
Query 79392 GTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTT 79451
||||| ||||||| ||| ||| || || ||| || | || || | ||| |||||
Sbjct 13573 ATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTT 13632
Query 79452 CAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAA 79511
| || || || || || || | | || |||||||| ||||| ||||||| || ||
Sbjct 13633 CTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAA 13692
Query 79512 CGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCG 79571
| ||| |||||| || || |||| |||||| | || ||||| |||||||||||
Sbjct 13693 TGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCG 13752
Query 79572 GAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGC 79631
||||| || |||||||||| || | ||||| || ||| ||| || ||| | ||
Sbjct 13753 TAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGC 13812
Query 79632 CCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACT 79690
|| || | | | | || || || || || || | || ||||| || ||
Sbjct 13813 ACGGAT-TCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATG 13871
Query 79691 CCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGC 79750
|||||| || || || || || || || || ||||||||| | | ||||||||
Sbjct 13872 TCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATG 13931
Query 79751 TCGACATCTGTGGGTTGT-TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAG 79809
|| | |||| | |||| ||||| ||| ||| || || || | ||||| ||||||
Sbjct 13932 ATGAAAGCTGT-GCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAG 13990
Query 79810 AACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATG 79869
| || | | ||| || | ||| ||||| || ||| | || ||||| ||||| ||
Sbjct 13991 TATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAATA 14050
Query 79870 CCGACCGCGACGCGCATGA 79888
|| || || || |||||||
Sbjct 14051 CCAACGGCAACACGCATGA 14069
Score = 172 bits (190), Expect = 6e-38
Identities = 396/591 (67%), Gaps = 4/591 (1%)
Strand=Plus/Minus
Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACG 19175
||||||| || || || || || || || ||||| || | | | | ||||| |||
Sbjct 14069 TCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGCGCCATTGAGACCTACA 14010
Query 19176 ACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGA 19235
|||| ||| | | || | |||||| ||||| | || || |||||| ||| |||||
Sbjct 14009 ACCTTATGTCCAACAAATACTTCACACACGCCTCCCCTACACTTTTCTCCGCTGGTACAC 13950
Query 19236 -ACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGC 19294
|||| | ||| | || || ||||| | | ||||||||| || || ||||| ||
Sbjct 13949 CACAAGCA-CAGCTTTCATCATGCTTCCTCATTGATATGAAGGAGGATAGTATTGATGGT 13891
Query 19295 ATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATC 19354
|| || || || |||||| || || ||||| || | || ||||| || ||
Sbjct 13890 ATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGGAGGTATTGGTCTC 13831
Query 19355 CAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGA 19413
|| | | | | ||||| | | |||| || ||| || || ||||| || |
Sbjct 13830 AACATTCACAGA-ATCCGTGCCACTGGTGCATACATCGCCGGTACCAACGGTAACTCCAA 13772
Query 19414 CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGG 19473
||| ||||| || ||||| || || ||||| ||||| || || |||||| |||| || ||
Sbjct 13771 CGGCATCGTACCGATGCTACGAGTTTTCAATAACACTGCTAGATACGTCGACCAAGGTGG 13712
Query 19474 CGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGA 19533
||| || || | || || |||| || ||||| |||||||| || || | ||
Sbjct 13711 AAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTGGCACGCAGATGTTTTCGA 13652
Query 19534 TTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCAC 19593
||||| || || || |||||| || | || || | ||| || || || |||
Sbjct 13651 GTTCCTGGACCTCCGAAAGAACCACGGCAAGGAAGAAGTCCGCGCCCGTGATCTTTTCTA 13592
Query 19594 GGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCT 19653
||||||||||||||||| || |||||| || ||||| ||| ||| || ||| ||
Sbjct 13591 TGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCGGATTGGACACT 13532
Query 19654 GATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTT 19704
|||||||| | ||||| ||||| | | || || || ||||| | |||
Sbjct 13531 AATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATATGGCGACGAGTT 13481
>seq845
Length=273148
Score = 116 bits (128), Expect = 4e-21
Identities = 310/460 (67%), Gaps = 28/460 (6%)
Strand=Plus/Minus
Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031
||||| || ||||| | |||||||| ||| || || || ||||||||| ||| || ||
Sbjct 251787 TTTGCTCAGCGTCTGGTTGCTTTTGC-TGCTGTTGAGGGCATCTTCTTCAGTGGATCATT 251729
Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091
| | |||| ||||||||||| ||||||||| | ||| | || || | ||||||||| ||
Sbjct 251728 CGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTTACTTTCTCCAATGA 251669
Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCT 60151
||| || ||||| || || || |||||| || || || ||| | | || ||| | ||
Sbjct 251668 GCTCATCTCCCGTGATGAAGGTCTCCATACCGACTTCGC-GTGCCTC-CTCTTCTC-CCA 251612
Query 60152 ATTGGAAAAATGCCCTTCCAAGGA-TATTCACAAGAT-TGTTCAGTG-GGCTTGTGAAGT 60208
||| | | | || |||| | | |||||| | ||| | |||| ||| |
Sbjct 251611 CTTGAAGCACCGTCCAAGCAAGCAGGCTGTCCAAGATGTCATCACAGAGGCTGTTGAGAT 251552
Query 60209 GGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGA 60268
|| || ||| | || || || ||||| || ||| | || ||| |||| ||
Sbjct 251551 CGAACAAGAATTCTTGACCGAGGCTCTTCCTTGTGCACTTCTTGGCATGAACGC----GA 251496
Query 60269 A----ATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTG-----G 60319
| |||| ||| ||||| |||| ||||| || || ||| | | | ||| |
Sbjct 251495 ACTTGATGAAGCAATACATCGAGTTCGTCGCCGATCGTCTCCTAGTCGCTCTTGGTAACG 251436
Query 60320 AGAAGGACCAATTTAC-GGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGG 60378
|||||| | ||| | || ||||| ||||||| ||||||| |||||| | |
Sbjct 251435 AGAAGG-----TGTACAAGTCTG-CCAACCCATTCGACTTCATGGAGAACATCTCCCTAG 251382
Query 60379 AAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418
||| ||||| |||||||| |||||| | || || || ||
Sbjct 251381 CAGGCAAGACAAACTTCTTCGAGAAGAGAGTTGGTGACTA 251342
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548513575811280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |