Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08-
07] 1,637 sequences; 39,468,807 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq586 179 4e-40
seq845 84.2 2e-11
>seq586
Length=108090
Score = 179 bits (198), Expect = 4e-40
Identities = 498/758 (66%), Gaps = 12/758 (2%)
Strand=Plus/Minus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| || ||| | ||||| ||||||||||| | | | | | |||||| |||
Sbjct 14069 TCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGCGCCATTGAGACCTACA 14010
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
|| | ||| | | || ||||| || |||||| | || || || ||| |||||||||
Sbjct 14009 ACCTTATGTCCAACAAATACTTCACACACGCCTCCCCTACACTTTTCTCCGCTGGTACAC 13950
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
|| | ||| | || |||||||| | | |||||||| || || || || |
Sbjct 13949 CACAAGCACAGCTTTCATCATGCTTCCTCATTGATATGAAGGAGGATAGTATTGATGGTA 13890
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432
| || || || |||||| ||||| ||||| || | || ||||| ||| ||
Sbjct 13889 TTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGGAGGTATTGGTCTCA 13830
Query 53433 AC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490
|| | | | ||| ||||||| | || || ||| || || ||||| | || |
Sbjct 13829 ACATTCACAGAA--TCCGTGCCACTGGTGCATACATCGCCGGTACCAACGGTAACTCCAA 13772
Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
|| ||||| || ||||| || || ||||| ||||| || | |||||| |||| |||||
Sbjct 13771 CGGCATCGTACCGATGCTACGAGTTTTCAATAACACTGCTAGATACGTCGACCAAGGTGG 13712
Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610
||||| || | || || |||| || ||||| |||||||| || || | ||
Sbjct 13711 AAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTGGCACGCAGATGTTTTCGA 13652
Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670
||| || || || || ||| || || | ||||| | ||| |||||| || ||
Sbjct 13651 GTTCCTGGACCTCCGAAAGAACCACGGCAAGGAAGAAGTCCGCGCCCGTGATCTTTTCTA 13592
Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730
|| ||||||||||||| ||||||||| | || || ||| ||| ||| ||| ||
Sbjct 13591 TGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCGGATTGGACACT 13532
Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790
|||||||| || || || || || | | ||| || || || |||||| | | |
Sbjct 13531 AATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATATGGCGACGAGTTTGAAGCTCT 13472
Query 53791 GTATCGGACGTACGCAGTTCAGGGCCGCTACAAG----AAGAAGGTCAAGGCGCGTGAGG 53846
||| || || | || | || | || | | |||| |||| || | ||
Sbjct 13471 CTATGAGAGTTATG-AG---AAGGAAGGTAGAGGTCGCAAGACCATCAAAGCCCAAAAGC 13416
Query 53847 TATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGG 53906
| ||| | | || ||| || || ||||| |||| || | |||| |||||||
Sbjct 13415 TTTGGTACTCCATTCTCGAGGCTCAAACTGAGACCGGAAATCCATTCATGCTTTACAAGG 13356
Query 53907 ATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944
|| | |||| ||||||||||||| |||||| |||||
Sbjct 13355 ATGCATGCAACAAGAAGAGCAACCAAAAGAACCTCGGC 13318
Score = 84.2 bits (92), Expect = 2e-11
Identities = 140/199 (70%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACA--GAAGAGTCTGATTGACATGAG 55785
|||||| ||||| ||| || ||||||||| | || ||| | | || || | |||
Sbjct 12551 TCAAGGCACTTTACAAGACCGTCTGGGAGATTTCTCAACGAACAAT-TG-TTCAAATGGC 12494
Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845
|||||||||||||| | | |||||||| || || ||||||| |||| | | ||
Sbjct 12493 CGCTGATCGTGGTGCCTTTGTTGACCAGTCACAATCAATGAACATTCACATGAAAGACCC 12434
Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905
|| ||| |||| | | || ||||| || ||| ||||| ||| |||||||| ||
Sbjct 12433 CACAATGGGCAAGATTACTTCCATGCATTTCGCCGGTTGGAAATTGGGTCTCAAGACCGG 12374
Query 55906 TATGTACTATCTGCGGACC 55924
|||||||| || || |||
Sbjct 12373 AATGTACTACCTCCGTACC 12355
>seq845
Length=273148
Score = 84.2 bits (92), Expect = 2e-11
Identities = 302/460 (66%), Gaps = 28/460 (6%)
Strand=Plus/Plus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|| ||||| || | ||| || || ||||| ||||| ||| | | ||||||||||||||
Sbjct 251342 TAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTCCATG 251401
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCA--AACTGTGCC-ATGAGG 74579
||||||| ||||| | ||| | |||||| | || | | | | |||
Sbjct 251402 AAGTCGAATGGGTTGGCAGACTTGTACAC---CTTCTCGTTACCAAGAGCGACTAGGAGA 251458
Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639
||||| || || || | ||||| ||| |||| ||| | |||||| | |||
Sbjct 251459 CGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGCGTTCATGCCAAGAAGTGCA 251518
Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCAT-TG--GACAATC 74696
|| || || |||||||| | || || || | ||| |||| | || |||| ||
Sbjct 251519 CAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCAACAGCCTCTGTGATGACA-TC 251577
Query 74697 TTGTGAATGTCT------TTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCAC 74749
||| || | || ||||| || | | ||| ||| ||| | || | |||
Sbjct 251578 TTG-GACAGCCTGCTTGCTTGGACGG-------TGCTTCAAGTGGGAGAAGAGGAGGCAC 251629
Query 74750 GGCAAACTCCTGATGCGAG-CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGC 74808
| | || || ||| ||| |||||||| | | || | ||||| || || | ||| |
Sbjct 251630 G-CGAAGTCGGTATG-GAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTAAGAC 251687
Query 74809 CAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGA 74868
||| ||| | ||||||||||| | ||| ||||| | | ||| || |||||||||||||
Sbjct 251688 CAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGA 251747
Query 74869 TGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908
|||| || ||| ||||| || || || || || || ||
Sbjct 251748 TGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAA 251787
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547204802592600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |