Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242905.1_202017-08- 07] 1,637 sequences; 39,468,807 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq586 179 4e-40 seq845 84.2 2e-11 >seq586 Length=108090 Score = 179 bits (198), Expect = 4e-40 Identities = 498/758 (66%), Gaps = 12/758 (2%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || ||| | ||||| ||||||||||| | | | | | |||||| ||| Sbjct 14069 TCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGCGCCATTGAGACCTACA 14010 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | | || ||||| || |||||| | || || || ||| ||||||||| Sbjct 14009 ACCTTATGTCCAACAAATACTTCACACACGCCTCCCCTACACTTTTCTCCGCTGGTACAC 13950 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || | ||| | || |||||||| | | |||||||| || || || || | Sbjct 13949 CACAAGCACAGCTTTCATCATGCTTCCTCATTGATATGAAGGAGGATAGTATTGATGGTA 13890 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 | || || || |||||| ||||| ||||| || | || ||||| ||| || Sbjct 13889 TTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGGAGGTATTGGTCTCA 13830 Query 53433 AC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || | | | ||| ||||||| | || || ||| || || ||||| | || | Sbjct 13829 ACATTCACAGAA--TCCGTGCCACTGGTGCATACATCGCCGGTACCAACGGTAACTCCAA 13772 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || ||||| || ||||| || || ||||| ||||| || | |||||| |||| ||||| Sbjct 13771 CGGCATCGTACCGATGCTACGAGTTTTCAATAACACTGCTAGATACGTCGACCAAGGTGG 13712 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 ||||| || | || || |||| || ||||| |||||||| || || | || Sbjct 13711 AAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTGGCACGCAGATGTTTTCGA 13652 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670 ||| || || || || ||| || || | ||||| | ||| |||||| || || Sbjct 13651 GTTCCTGGACCTCCGAAAGAACCACGGCAAGGAAGAAGTCCGCGCCCGTGATCTTTTCTA 13592 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 || ||||||||||||| ||||||||| | || || ||| ||| ||| ||| || Sbjct 13591 TGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCGGATTGGACACT 13532 Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790 |||||||| || || || || || | | ||| || || || |||||| | | | Sbjct 13531 AATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATATGGCGACGAGTTTGAAGCTCT 13472 Query 53791 GTATCGGACGTACGCAGTTCAGGGCCGCTACAAG----AAGAAGGTCAAGGCGCGTGAGG 53846 ||| || || | || | || | || | | |||| |||| || | || Sbjct 13471 CTATGAGAGTTATG-AG---AAGGAAGGTAGAGGTCGCAAGACCATCAAAGCCCAAAAGC 13416 Query 53847 TATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGG 53906 | ||| | | || ||| || || ||||| |||| || | |||| ||||||| Sbjct 13415 TTTGGTACTCCATTCTCGAGGCTCAAACTGAGACCGGAAATCCATTCATGCTTTACAAGG 13356 Query 53907 ATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944 || | |||| ||||||||||||| |||||| ||||| Sbjct 13355 ATGCATGCAACAAGAAGAGCAACCAAAAGAACCTCGGC 13318 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACA--GAAGAGTCTGATTGACATGAG 55785 |||||| ||||| ||| || ||||||||| | || ||| | | || || | ||| Sbjct 12551 TCAAGGCACTTTACAAGACCGTCTGGGAGATTTCTCAACGAACAAT-TG-TTCAAATGGC 12494 Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 |||||||||||||| | | |||||||| || || ||||||| |||| | | || Sbjct 12493 CGCTGATCGTGGTGCCTTTGTTGACCAGTCACAATCAATGAACATTCACATGAAAGACCC 12434 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 || ||| |||| | | || ||||| || ||| ||||| ||| |||||||| || Sbjct 12433 CACAATGGGCAAGATTACTTCCATGCATTTCGCCGGTTGGAAATTGGGTCTCAAGACCGG 12374 Query 55906 TATGTACTATCTGCGGACC 55924 |||||||| || || ||| Sbjct 12373 AATGTACTACCTCCGTACC 12355 >seq845 Length=273148 Score = 84.2 bits (92), Expect = 2e-11 Identities = 302/460 (66%), Gaps = 28/460 (6%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || ||||| || | ||| || || ||||| ||||| ||| | | |||||||||||||| Sbjct 251342 TAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTCCATG 251401 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCA--AACTGTGCC-ATGAGG 74579 ||||||| ||||| | ||| | |||||| | || | | | | ||| Sbjct 251402 AAGTCGAATGGGTTGGCAGACTTGTACAC---CTTCTCGTTACCAAGAGCGACTAGGAGA 251458 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 ||||| || || || | ||||| ||| |||| ||| | |||||| | ||| Sbjct 251459 CGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGCGTTCATGCCAAGAAGTGCA 251518 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCAT-TG--GACAATC 74696 || || || |||||||| | || || || | ||| |||| | || |||| || Sbjct 251519 CAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCAACAGCCTCTGTGATGACA-TC 251577 Query 74697 TTGTGAATGTCT------TTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCAC 74749 ||| || | || ||||| || | | ||| ||| ||| | || | ||| Sbjct 251578 TTG-GACAGCCTGCTTGCTTGGACGG-------TGCTTCAAGTGGGAGAAGAGGAGGCAC 251629 Query 74750 GGCAAACTCCTGATGCGAG-CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGC 74808 | | || || ||| ||| |||||||| | | || | ||||| || || | ||| | Sbjct 251630 G-CGAAGTCGGTATG-GAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTAAGAC 251687 Query 74809 CAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGA 74868 ||| ||| | ||||||||||| | ||| ||||| | | ||| || ||||||||||||| Sbjct 251688 CAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGA 251747 Query 74869 TGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 |||| || ||| ||||| || || || || || || || Sbjct 251748 TGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAA 251787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547204802592600