Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3070 98.7 1e-15 >seq3070 Length=35956 Score = 98.7 bits (108), Expect = 1e-15 Identities = 339/517 (66%), Gaps = 20/517 (4%) Strand=Plus/Plus Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973 ||||| |||| ||| | || ||||||||||| || || || ||| || || || ||| Sbjct 28523 TGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTCC 28582 Query 15974 ATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAAT 16033 || || || || || || | || | | ||| || || || | ||||| Sbjct 28583 ATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTTACCAAGAGC---AACTAGG 28639 Query 16034 ---CTATCTGCTACAAATTCTATATATTGACACATTAAGT-CGCAATTAATTCCTATAAG 16089 | ||| || || || || || ||||| ||| |||| ||| || || || | ||| Sbjct 28640 AGACGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGCG-TTCATGCCAAGAAG 28698 Query 16090 TCGTACC-GGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGA 16148 | | || |||||||| | || || |||| |||||| ||| | || || ||| | |||| Sbjct 28699 T-GCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCGACAGCCTCTGTGATGA 28757 Query 16149 TATC--GGT--GGCT-CGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACA 16203 ||| || | || | || || ||||||| || | ||| || | || || Sbjct 28758 CATCTTGGACAGCCTGCTTGCTTG-GACGGTGC----TTCAAGTGGGAGAAGAGGAGGCA 28812 Query 16204 CGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCC 16263 |||||||||| ||| || ||||| || | | ||| || || ||||| ||||| | || Sbjct 28813 CGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACC 28872 Query 16264 TGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATAT 16323 | ||| || || ||||| | |||||| || | ||| ||||| || ||||| || Sbjct 28873 AGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGAT 28932 Query 16324 ACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAAT 16383 |||||||||| |||||||| | | || | || | |||| | ||| | |||| Sbjct 28933 GCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTTTTGTCTTGAAT 28992 Query 16384 CCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAA 16420 |||| | |||| |||||||| | || || ||| Sbjct 28993 CCATCTGACAGCCCAGTCGGCTTTCTTCTTAATGCAA 29029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511391322425200