Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq3070 98.7 1e-15
>seq3070
Length=35956
Score = 98.7 bits (108), Expect = 1e-15
Identities = 339/517 (66%), Gaps = 20/517 (4%)
Strand=Plus/Plus
Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973
||||| |||| ||| | || ||||||||||| || || || ||| || || || |||
Sbjct 28523 TGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTCC 28582
Query 15974 ATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAAT 16033
|| || || || || || | || | | ||| || || || | |||||
Sbjct 28583 ATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTTACCAAGAGC---AACTAGG 28639
Query 16034 ---CTATCTGCTACAAATTCTATATATTGACACATTAAGT-CGCAATTAATTCCTATAAG 16089
| ||| || || || || || ||||| ||| |||| ||| || || || | |||
Sbjct 28640 AGACGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGCG-TTCATGCCAAGAAG 28698
Query 16090 TCGTACC-GGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGA 16148
| | || |||||||| | || || |||| |||||| ||| | || || ||| | ||||
Sbjct 28699 T-GCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCGACAGCCTCTGTGATGA 28757
Query 16149 TATC--GGT--GGCT-CGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACA 16203
||| || | || | || || ||||||| || | ||| || | || ||
Sbjct 28758 CATCTTGGACAGCCTGCTTGCTTG-GACGGTGC----TTCAAGTGGGAGAAGAGGAGGCA 28812
Query 16204 CGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCC 16263
|||||||||| ||| || ||||| || | | ||| || || ||||| ||||| | ||
Sbjct 28813 CGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACC 28872
Query 16264 TGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATAT 16323
| ||| || || ||||| | |||||| || | ||| ||||| || ||||| ||
Sbjct 28873 AGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGAT 28932
Query 16324 ACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAAT 16383
|||||||||| |||||||| | | || | || | |||| | ||| | ||||
Sbjct 28933 GCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTTTTGTCTTGAAT 28992
Query 16384 CCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAA 16420
|||| | |||| |||||||| | || || |||
Sbjct 28993 CCATCTGACAGCCCAGTCGGCTTTCTTCTTAATGCAA 29029
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511391322425200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |