Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq3070 147 2e-30
seq1292 132 5e-26
seq443 107 2e-18
seq839 93.3 4e-14
>seq3070
Length=35956
Score = 147 bits (162), Expect = 2e-30
Identities = 204/285 (72%), Gaps = 3/285 (1%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||||||||||||||| || |||||||| | || ||| | ||| ||
Sbjct 29420 ATCTGGCAAATGTACAAAAAGGCCGAGGCATCTTTCTGGACAGCAGAAGAGATCGACTTG 29361
Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752
|| |||||| ||| ||| | | | || || | |||||| ||||||||
Sbjct 29360 TCAAAGGACCTTCACGATTGGAATAACAAACTCAATGATGATGAGCGCTATTTCATCTCT 29301
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||||| || || || ||||| || |||||| || ||||||||||| || ||||||||
Sbjct 29300 CACGTCCTCGCATTCTTCGCAGCATCCGACGGAATAGTCAACGAGAACCTTGTCGAGCGC 29241
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| | || || || | ||||||| || ||||||||||| || || || |||
Sbjct 29240 TTCAGTGGTGAAGTTCAAATCCCCGAGGCTCGTTGCTTCTACGGTTTCCAAATTATGATG 29181
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
||||| | ||||| |||| || || ||||||||| || |||
Sbjct 29180 GAGAATATCCACTCCGAAACATACTCTCTCCTCATCGATACATAC 29136
Score = 123 bits (136), Expect = 3e-23
Identities = 223/321 (69%), Gaps = 4/321 (1%)
Strand=Plus/Minus
Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095
|||| ||||| || || || || || |||||| ||||||| || ||||| | |
Sbjct 28964 AGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCATTCGCTTCTA 28905
Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155
| || ||||||||||| || ||| | ||| | || || |||||| ||| ||||||||||
Sbjct 28904 TCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATGAGCTCATCT 28845
Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGC 117215
|| | || || ||||| ||| |||||| || || | || ||| || ||| ||| |
Sbjct 28844 CCCGTGATGAAGGTCTCCATACCGACTTCGCGTGCCTCCTCTTCTCCCACTTGAAGCACC 28785
Query 117216 GACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCT 117275
| || ||| | | ||| || || |||| || || |||| ||||| || |
Sbjct 28784 GTCCAAGCAAGCAGGCTGTCCAAGATGTCATCACAGAGGCTGTCGAGATCGAACAAGAAT 28725
Query 117276 TCCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAA-ACGATGTCGCA 117333
|| | ||||| || || || |||| || || || | || ||||| |||| |||
Sbjct 28724 TCTTGACCGAGGCTCTTCCTTGTGC-ACTTCTTGGCATGAA-CGCGAACTTGATGAAGCA 28667
Query 117334 ATACATCGAGTTCGTCGCCGA 117354
|||||||||||||||||||||
Sbjct 28666 ATACATCGAGTTCGTCGCCGA 28646
>seq1292
Length=3705
Score = 132 bits (146), Expect = 5e-26
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| ||||| |||||||| |||||||||||| |||| || ||| || |
Sbjct 2170 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 2111
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | ||||| || || | ||||| ||||| ||||| | || |||
Sbjct 2110 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 2051
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| || |||| ||| ||||| || || || || | |||||||| ||||||||||
Sbjct 2050 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 1991
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
||||| ||||| |||| || ||
Sbjct 1990 ATCCAAAAGGAATCCACTCTTCA 1968
>seq443
Length=6205
Score = 107 bits (118), Expect = 2e-18
Identities = 138/188 (73%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770
|||| ||||| ||||||||| |||| ||||| ||| ||| | | | |||| | |||
Sbjct 3818 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACTATCGACAACG-TAAAG 3760
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
|| |||| || || ||||| || ||| ||||||| || || | |||| |||||||
Sbjct 3759 AGCAAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCGGGC 3700
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
||||| || || || | || ||| | | |||||||||||| || |||||| | || ||
Sbjct 3699 AAACAACTTGAAGATGGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTACTCTC 3640
Query 40891 CATCTAGT 40898
||||| ||
Sbjct 3639 CATCTCGT 3632
Score = 105 bits (116), Expect = 7e-18
Identities = 149/207 (72%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || || || || ||||| |||||||| | || ||||| | |||||| | |
Sbjct 3546 TCGTCAAGACTCTTACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCG 3487
Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| |||| ||||| || || | ||||| |||||||| || |||| || ||||| |
Sbjct 3486 ACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTG 3428
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| || ||||| || || || | |||||||| | ||||||||||||||| ||
Sbjct 3427 ATCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAA 3368
Query 40879 GAGGCCACGCTGCATCTAGTGTTGCGC 40905
|| |||| || || | ||| | |||
Sbjct 3367 GAATCCACCCTTCACTTGGTGCTCCGC 3341
Score = 96.9 bits (106), Expect = 4e-15
Identities = 146/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || || || || || || ||||| | || || || | |
Sbjct 3328 ATGCAAATCTTCGTGAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCA 3269
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| | || ||| |||| || || ||||| ||||| |||||||
Sbjct 3268 GATACCATCGACAACG-TGAAATCAAAGATTCAAGATAAGGAGGGTATCCCACCGGACCA 3210
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| || |||| || || || || || || || | ||||| || ||||||||
Sbjct 3209 GCAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAA 3150
Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893
||||||||| ||| |||| ||||||
Sbjct 3149 CATCCAGAAAGAGTCCACACTGCAT 3125
>seq839
Length=32500
Score = 93.3 bits (102), Expect = 4e-14
Identities = 134/188 (71%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 40694 AAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGA 40751
||||| ||||| || || || ||||| || ||||||||| | || ||||| || ||||
Sbjct 17724 AAATAGCTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCCGA 17665
Query 40752 CAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811
| | | | ||||| || || | ||||| ||||| || ||| ||||||| ||
Sbjct 17664 TACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACA 17605
Query 40812 ACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 40871
||| | |||| ||| || || || || || |||| || ||||| |||||||||||
Sbjct 17604 ACGTTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACAT 17545
Query 40872 CCAGAAGG 40879
||| ||||
Sbjct 17544 CCAAAAGG 17537
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515195950733600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |