Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3070 147 2e-30 seq1292 132 5e-26 seq443 107 2e-18 seq839 93.3 4e-14 >seq3070 Length=35956 Score = 147 bits (162), Expect = 2e-30 Identities = 204/285 (72%), Gaps = 3/285 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||||||||||||||| || |||||||| | || ||| | ||| || Sbjct 29420 ATCTGGCAAATGTACAAAAAGGCCGAGGCATCTTTCTGGACAGCAGAAGAGATCGACTTG 29361 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752 || |||||| ||| ||| | | | || || | |||||| |||||||| Sbjct 29360 TCAAAGGACCTTCACGATTGGAATAACAAACTCAATGATGATGAGCGCTATTTCATCTCT 29301 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || || || ||||| || |||||| || ||||||||||| || |||||||| Sbjct 29300 CACGTCCTCGCATTCTTCGCAGCATCCGACGGAATAGTCAACGAGAACCTTGTCGAGCGC 29241 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | || || || | ||||||| || ||||||||||| || || || ||| Sbjct 29240 TTCAGTGGTGAAGTTCAAATCCCCGAGGCTCGTTGCTTCTACGGTTTCCAAATTATGATG 29181 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||| | ||||| |||| || || ||||||||| || ||| Sbjct 29180 GAGAATATCCACTCCGAAACATACTCTCTCCTCATCGATACATAC 29136 Score = 123 bits (136), Expect = 3e-23 Identities = 223/321 (69%), Gaps = 4/321 (1%) Strand=Plus/Minus Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095 |||| ||||| || || || || || |||||| ||||||| || ||||| | | Sbjct 28964 AGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCATTCGCTTCTA 28905 Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155 | || ||||||||||| || ||| | ||| | || || |||||| ||| |||||||||| Sbjct 28904 TCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATGAGCTCATCT 28845 Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGC 117215 || | || || ||||| ||| |||||| || || | || ||| || ||| ||| | Sbjct 28844 CCCGTGATGAAGGTCTCCATACCGACTTCGCGTGCCTCCTCTTCTCCCACTTGAAGCACC 28785 Query 117216 GACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCT 117275 | || ||| | | ||| || || |||| || || |||| ||||| || | Sbjct 28784 GTCCAAGCAAGCAGGCTGTCCAAGATGTCATCACAGAGGCTGTCGAGATCGAACAAGAAT 28725 Query 117276 TCCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAA-ACGATGTCGCA 117333 || | ||||| || || || |||| || || || | || ||||| |||| ||| Sbjct 28724 TCTTGACCGAGGCTCTTCCTTGTGC-ACTTCTTGGCATGAA-CGCGAACTTGATGAAGCA 28667 Query 117334 ATACATCGAGTTCGTCGCCGA 117354 ||||||||||||||||||||| Sbjct 28666 ATACATCGAGTTCGTCGCCGA 28646 >seq1292 Length=3705 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| |||||||| |||||||||||| |||| || ||| || | Sbjct 2170 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 2111 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||||| || || | ||||| ||||| ||||| | || ||| Sbjct 2110 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 2051 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| ||| ||||| || || || || | |||||||| |||||||||| Sbjct 2050 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 1991 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 ||||| ||||| |||| || || Sbjct 1990 ATCCAAAAGGAATCCACTCTTCA 1968 >seq443 Length=6205 Score = 107 bits (118), Expect = 2e-18 Identities = 138/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| ||||||||| |||| ||||| ||| ||| | | | |||| | ||| Sbjct 3818 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACTATCGACAACG-TAAAG 3760 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || |||| || || ||||| || ||| ||||||| || || | |||| ||||||| Sbjct 3759 AGCAAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCGGGC 3700 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 ||||| || || || | || ||| | | |||||||||||| || |||||| | || || Sbjct 3699 AAACAACTTGAAGATGGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTACTCTC 3640 Query 40891 CATCTAGT 40898 ||||| || Sbjct 3639 CATCTCGT 3632 Score = 105 bits (116), Expect = 7e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || || || ||||| |||||||| | || ||||| | |||||| | | Sbjct 3546 TCGTCAAGACTCTTACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCG 3487 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| ||||| || || | ||||| |||||||| || |||| || ||||| | Sbjct 3486 ACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTG 3428 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || ||||| || || || | |||||||| | ||||||||||||||| || Sbjct 3427 ATCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAA 3368 Query 40879 GAGGCCACGCTGCATCTAGTGTTGCGC 40905 || |||| || || | ||| | ||| Sbjct 3367 GAATCCACCCTTCACTTGGTGCTCCGC 3341 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || || || ||||| | || || || | | Sbjct 3328 ATGCAAATCTTCGTGAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCA 3269 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | || ||| |||| || || ||||| ||||| ||||||| Sbjct 3268 GATACCATCGACAACG-TGAAATCAAAGATTCAAGATAAGGAGGGTATCCCACCGGACCA 3210 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| || || || || || || || | ||||| || |||||||| Sbjct 3209 GCAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAA 3150 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 ||||||||| ||| |||| |||||| Sbjct 3149 CATCCAGAAAGAGTCCACACTGCAT 3125 >seq839 Length=32500 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 40694 AAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGA 40751 ||||| ||||| || || || ||||| || ||||||||| | || ||||| || |||| Sbjct 17724 AAATAGCTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCCGA 17665 Query 40752 CAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811 | | | | ||||| || || | ||||| ||||| || ||| ||||||| || Sbjct 17664 TACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACA 17605 Query 40812 ACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 40871 ||| | |||| ||| || || || || || |||| || ||||| ||||||||||| Sbjct 17604 ACGTTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACAT 17545 Query 40872 CCAGAAGG 40879 ||| |||| Sbjct 17544 CCAAAAGG 17537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515195950733600