Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq443 123 2e-23 seq1292 109 5e-19 >seq443 Length=6205 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || || |||||||| |||||||| ||||||| ||||| ||| || Sbjct 3347 CACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTC 3406 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||| ||||| |||||| |||| | ||| || ||||| ||||| |||||||||||||| Sbjct 3407 GAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATGCCCTCCTTGTCCTG 3466 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||| | ||||||||| | || | || || Sbjct 3467 GATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTT 3526 Query 118709 GCCGGTCAGAGTTTTTAC 118726 ||| || ||||| || || Sbjct 3527 GCCAGTAAGAGTCTTGAC 3544 Score = 98.7 bits (108), Expect = 9e-16 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| |||||||| |||||||||||||| ||||||| || || ||| || || ||| Sbjct 3638 TGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCTTCAAGTTGT 3697 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || ||| |||| | ||||| || || || || || |||||||| || ||| || Sbjct 3698 TTGCCCGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGAATCTTG 3757 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| || || || ||||||||||| ||| | || |||||||| Sbjct 3758 CTCTTTACGTTGTCGATAGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 3816 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||| || |||||||||||||| | ||| | |||||| Sbjct 2891 CACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTC 2950 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| |||||||| |||| | ||||| || || || || || |||||||||||| Sbjct 2951 CAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGAATACCCTCCTTGTCTTG 3010 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| ||| || || | || | ||| || | || || || | || | || || Sbjct 3011 AATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTT 3070 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| ||| || || || |||||||| Sbjct 3071 TCCGGTCAAAGTCTTGACGAAGATCTGCAT 3100 >seq1292 Length=3705 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || || || ||||| |||||||| ||| | ||||| ||| ||| Sbjct 1962 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCG 2021 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || || ||| |||| ||||| |||||||| || || || ||||||||||| Sbjct 2022 AGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGG 2081 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||| || | | || ||||||| ||| | ||||| Sbjct 2082 ATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTA 2141 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || || || ||||| || || ||||||||| || Sbjct 2142 CCCGTGAGGGTTTTGACGAAGATCTGCATGACT 2174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433811312818120