Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3070 95.1 1e-14 >seq3070 Length=35956 Score = 95.1 bits (104), Expect = 1e-14 Identities = 195/288 (68%), Gaps = 3/288 (1%) Strand=Plus/Plus Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563 ||| || ||||| || || | | || |||| || || ||||||||||| || || Sbjct 29133 AATGTATGTATCGATGAGGAGAGAGTATGTTTCGGAGTGGATATTCTCCATCATAATTTG 29192 Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAA 16623 ||||| || ||||| | ||| |||| ||||| |||||| || | || | | Sbjct 29193 GAAACCGTAGAAGCAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAG 29252 Query 16624 GTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtt 16683 ||| ||||| |||||||| ||| ||||| || || || || | ||| || |||| Sbjct 29253 GTTCTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATA 29312 Query 16684 tttttCGTTATC--TGAAAGTTTTA-ACCAGTCAGAAAAATCTTTTGATAAATCGACCTC 16740 || | ||| ||| | ||| ||| || || || ||||| || |||| ||| Sbjct 29313 GCGCTCATCATCATTGAGTTTGTTATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTC 29372 Query 16741 TTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATAT 16788 |||| | ||||| ||||| || | |||||||| ||||||| ||| || Sbjct 29373 TTCTGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACATTTGCCAGAT 29420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462491129146000