Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq3070 95.1 1e-14
>seq3070
Length=35956
Score = 95.1 bits (104), Expect = 1e-14
Identities = 195/288 (68%), Gaps = 3/288 (1%)
Strand=Plus/Plus
Query 16504 AATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTG 16563
||| || ||||| || || | | || |||| || || ||||||||||| || ||
Sbjct 29133 AATGTATGTATCGATGAGGAGAGAGTATGTTTCGGAGTGGATATTCTCCATCATAATTTG 29192
Query 16564 AAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAA 16623
||||| || ||||| | ||| |||| ||||| |||||| || | || | |
Sbjct 29193 GAAACCGTAGAAGCAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAG 29252
Query 16624 GTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtt 16683
||| ||||| |||||||| ||| ||||| || || || || | ||| || ||||
Sbjct 29253 GTTCTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATA 29312
Query 16684 tttttCGTTATC--TGAAAGTTTTA-ACCAGTCAGAAAAATCTTTTGATAAATCGACCTC 16740
|| | ||| ||| | ||| ||| || || || ||||| || |||| |||
Sbjct 29313 GCGCTCATCATCATTGAGTTTGTTATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTC 29372
Query 16741 TTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATAT 16788
|||| | ||||| ||||| || | |||||||| ||||||| ||| ||
Sbjct 29373 TTCTGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACATTTGCCAGAT 29420
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462491129146000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |