Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq443 107 2e-18
>seq443
Length=6205
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||||| ||||||||||||||||||||||| || || | | || |||
Sbjct 2892 ACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCC 2951
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
| || ||||| || || ||||| ||||||||||| || || | |||||||||||| |
Sbjct 2952 AACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGAATACCCTCCTTGTCTTGA 3011
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| ||| ||| || | | | | || ||||| |||| ||||| |||||
Sbjct 3012 ATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTT 3071
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| |||| |||||| || ||||| |||||
Sbjct 3072 CCGGTCAAAGTCTTGACGAAGATCTGCAT 3100
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || ||| || || || |||||||||||| |||| |||| | || ||
Sbjct 3348 ACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCG 3407
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|||||||| || ||||| ||||| || ||||| || ||||| | ||||||||||||
Sbjct 3408 AGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATGCCCTCCTTGTCCTGG 3467
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| ||| ||||| | || || ||||||
Sbjct 3468 ATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTTG 3527
Query 45308 CCCGTCAGAGTCTTCAC 45324
|| || |||||||| ||
Sbjct 3528 CCAGTAAGAGTCTTGAC 3544
Score = 82.4 bits (90), Expect = 6e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
|||||| ||||||||||||||| ||| || | || || |||||||| || |||||
Sbjct 3649 CTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCTTCAAGTTGTTTGCCCGCGAA 3708
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
||||| ||||||||||| || || | |||||||| ||| ||| ||
Sbjct 3709 GATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGAATCTT 3756
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395057817925810
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |