Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq3070 118 9e-22
seq443 104 2e-17
>seq3070
Length=35956
Score = 118 bits (130), Expect = 9e-22
Identities = 229/335 (68%), Gaps = 5/335 (1%)
Strand=Plus/Minus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | |||||||||||||| || ||||| || ||||| | ||||| | ||| ||
Sbjct 29420 ATCTGGCAAATGTACAAAAAGGCCGAGGCATCTTTCTGGACAGCAGAAGAGATCGACTTG 29361
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686
|| ||||| || ||||||| || | ||||| || |||| | |||| ||
Sbjct 29360 TCAAAGGACCTTCACGATTGGAATAACAAACTCAATGATGATGAGCGCTATTTCATCTCT 29301
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||||| | || || ||||| |||||||| || || || |||||||| | ||||| |
Sbjct 29300 CACGTCCTCGCATTCTTCGCAGCATCCGACGGAATAGTCAACGAGAACCTTGTCGAGCGC 29241
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
|| ||||| ||| | | ||||| | ||||| ||||| || ||| | ||
Sbjct 29240 TTCAGTGGTGAAGTTCAAATCCCCGAGGCTCGTTGCTTCTACGGTTTCCAAATTATGATG 29181
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGG-ACAACGA 57865
|| || | || || |||| || || || ||||||||||| ||| | |||| ||||
Sbjct 29180 GAGAATATCCACTCCGAAACATACTCTCTCCTCATCGATACATACATTAAGGAACAAGCC 29121
Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAACAA 57900
| | ||| || || ||||| || || || ||||
Sbjct 29120 CAACGAACATA-TCTCTTCAATGCAATTGAGACAA 29087
>seq443
Length=6205
Score = 104 bits (114), Expect = 2e-17
Identities = 144/202 (71%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262
|||| |||||||| || ||||| || ||||| | || || || ||||||||| |||
Sbjct 3546 TCGTCAAGACTCTTACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCG 3487
Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322
| | ||||| | || ||||||||| ||| | || || || || || ||| | |
Sbjct 3486 ACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTGA 3427
Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382
| |||||||| ||||| | ||||| | || ||||||| || ||||| |||||||
Sbjct 3426 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 3367
Query 31383 AATCGACTCTTCATCTGGTACT 31404
|||| || ||||| |||| ||
Sbjct 3366 AATCCACCCTTCACTTGGTGCT 3345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445746284791200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |