Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3070 118 9e-22 seq443 104 2e-17 >seq3070 Length=35956 Score = 118 bits (130), Expect = 9e-22 Identities = 229/335 (68%), Gaps = 5/335 (1%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||||||||| || ||||| || ||||| | ||||| | ||| || Sbjct 29420 ATCTGGCAAATGTACAAAAAGGCCGAGGCATCTTTCTGGACAGCAGAAGAGATCGACTTG 29361 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || ||||| || ||||||| || | ||||| || |||| | |||| || Sbjct 29360 TCAAAGGACCTTCACGATTGGAATAACAAACTCAATGATGATGAGCGCTATTTCATCTCT 29301 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || ||||| |||||||| || || || |||||||| | ||||| | Sbjct 29300 CACGTCCTCGCATTCTTCGCAGCATCCGACGGAATAGTCAACGAGAACCTTGTCGAGCGC 29241 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || ||||| ||| | | ||||| | ||||| ||||| || ||| | || Sbjct 29240 TTCAGTGGTGAAGTTCAAATCCCCGAGGCTCGTTGCTTCTACGGTTTCCAAATTATGATG 29181 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGG-ACAACGA 57865 || || | || || |||| || || || ||||||||||| ||| | |||| |||| Sbjct 29180 GAGAATATCCACTCCGAAACATACTCTCTCCTCATCGATACATACATTAAGGAACAAGCC 29121 Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAACAA 57900 | | ||| || || ||||| || || || |||| Sbjct 29120 CAACGAACATA-TCTCTTCAATGCAATTGAGACAA 29087 >seq443 Length=6205 Score = 104 bits (114), Expect = 2e-17 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| |||||||| || ||||| || ||||| | || || || ||||||||| ||| Sbjct 3546 TCGTCAAGACTCTTACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCG 3487 Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322 | | ||||| | || ||||||||| ||| | || || || || || ||| | | Sbjct 3486 ACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTGA 3427 Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382 | |||||||| ||||| | ||||| | || ||||||| || ||||| ||||||| Sbjct 3426 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 3367 Query 31383 AATCGACTCTTCATCTGGTACT 31404 |||| || ||||| |||| || Sbjct 3366 AATCCACCCTTCACTTGGTGCT 3345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445746284791200