Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq60 259 6e-64
seq3070 86.0 8e-12
>seq60
Length=14677
Score = 259 bits (286), Expect = 6e-64
Identities = 1146/1789 (64%), Gaps = 43/1789 (2%)
Strand=Plus/Plus
Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105
||||| ||||| || |||||||||| | ||||| || ||||||||||| || || |||
Sbjct 7937 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 7996
Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165
|| | |||| ||| |||||||| || | ||| | || ||| ||
Sbjct 7997 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 8056
Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225
|| || ||||| ||||| || || | ||||| || | || || ||||||| |
Sbjct 8057 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 8116
Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285
|| || ||| | ||| ||||| | || || |||| | ||| || || |||||| |
Sbjct 8117 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 8176
Query 62286 TTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 62342
|| | | || ||||| || ||||| || | || || | ||||| || | || |
Sbjct 8177 TTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCTGAC 8236
Query 62343 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCA 62402
|||||| | ||| | | | | || || |||||||| |||||||||||||||
Sbjct 8237 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 8296
Query 62403 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62462
| ||| || | |||| ||| || ||| || || ||||| | |||| || ||
Sbjct 8297 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 8356
Query 62463 AAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62521
| |||||||| || || || | || |||||||| || || | ||||| || | | |||
Sbjct 8357 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 8415
Query 62522 GTATGTTCTGATTT-TATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACAN 62580
|| | | |||| | |||| || | | |||| | |||||| || | ||| |||
Sbjct 8416 GTGTTGTTTGATGGATTTCTTCAAGCTAT-CCCAGTCCCAAAGGTCGGTAGGTGTAACTC 8474
Query 62581 NNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATG 62640
||||| || || || | | || ||| | || || ||||| |
Sbjct 8475 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAAGTCTCATAGG 8534
Query 62641 GTCCTTCCTTCTCAGCTAGTTTACAACTCGCC-TCT-AATGCACCGTAATAAATGGTTTC 62698
|| || || ||| | | |||| | | | || ||| ||| ||||| |||||
Sbjct 8535 TACCCAACTCCTTAGCAATCT--CAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 8592
Query 62699 AAAGATCTTCTTATTTAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAG-- 62755
||||| | | || || | |||| ||||| || |||||||| |||| |||||
Sbjct 8593 GAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATGG-TAATCGAAGAGCC 8650
Query 62756 AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62815
|| ||| || || || | ||||||||||| | | ||||||||| ||| | ||| |
Sbjct 8651 AAGAAA-GCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-GC 8708
Query 62816 GATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 62874
|||| | | ||||| | || || || || || || || || || || | |||||||
Sbjct 8709 TCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGA 8768
Query 62875 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT-TACA 62930
||| |||| || || | || || | ||||| | || | ||| || | ||
Sbjct 8769 CAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCA 8828
Query 62931 AACATGTTC--AATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCAT 62988
| ||||| | |||| || |||| ||||| || || |||| | | | |
Sbjct 8829 CAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGT 8888
Query 62989 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTAC 63048
||| | || || ||||| | ||| | || || || | || | ||| || |
Sbjct 8889 ATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGC 8948
Query 63049 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 63108
|||| ||||| || |||||||| ||||| ||||||||| | || || || | |||| |
Sbjct 8949 TCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGCCT 9008
Query 63109 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA----GATTTGTATCTCCTTTCT 63164
| | ||| | | ||| | | | || || || | || | || || | ||||
Sbjct 9009 CGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTTCT 9068
Query 63165 CTT---TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTA 63221
| | || |||||| | | ||| |||||||| || | |||| |||| | |
Sbjct 9069 CATAACTCTCATAGAG------AGC-TTCAAACTCGTCGCCATATACATCAGCCAACCCA 9121
Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281
|||||||||| || ||||| | | ||| || ||| | | || || ||||| |||
Sbjct 9122 GGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAG 9181
Query 63282 AGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340
||||| |||||||| | || ||| || ||||| | | | ||| || || ||
Sbjct 9182 AGATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCATG 9240
Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400
|||||| ||| || |||||| | | || ||| | ||||| || || | || | ||
Sbjct 9241 GTTCTTTCGAAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGC 9300
Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460
| | ||||| || |||||||| || || || | ||||||||| ||||| || ||||
Sbjct 9301 AAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAAC 9360
Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520
|| | ||| || | || ||||| || |||| |||||||||| ||| || | ||| |
Sbjct 9361 TCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGT 9420
Query 63521 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63580
|||||| || | ||| ||||| || || || || |||||||||| | || ||
Sbjct 9421 GGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACA 9480
Query 63581 TCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACA 63640
| || | || ||||| || || || || || || || |||| | || || || ||
Sbjct 9481 TGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGCA 9540
Query 63641 GCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63700
|| | || | | || || || || | ||||| || ||||| || ||
Sbjct 9541 TGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA 9600
Query 63701 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAA 63759
|||| | || | || ||||| |||||||| || || ||||| || | ||||
Sbjct 9601 GTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGAA 9659
Query 63760 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTT 63808
| || || || |||||||| | ||| || || || | ||| ||| |||
Sbjct 9660 TACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACTTT 9708
>seq3070
Length=35956
Score = 86.0 bits (94), Expect = 8e-12
Identities = 222/334 (66%), Gaps = 7/334 (2%)
Strand=Plus/Plus
Query 33804 GTTTCTATGGCATTAAAGAGATA-GtttttttCATTACTATCTTTAACATAAGTATCGAT 33862
|| || || ||||| |||||||| ||| || | | || |||| || ||||||||
Sbjct 29089 GTCTCAATTGCATTGAAGAGATATGTTCGTTGGGCTTGT-TCCTTAATGTATGTATCGAT 29147
Query 33863 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 33922
| ||| || |||| || || || || || || || || || |||||||| ||
Sbjct 29148 GAGGAGAGAGTATGTTTCGGAGTGGATATTCTCCATCATAATTTGGAAACCGTAGAAGCA 29207
Query 33923 TCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTAT 33982
| |||||||| || || ||||| || || || || | | || || || |||||
Sbjct 29208 ACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGGTTCTCGTTGACTAT 29267
Query 33983 TCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC----TG 34038
||| || ||||| || || || | || || || ||||| || || |
Sbjct 29268 TCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAGCGCTCATCATCATT 29327
Query 34039 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 34098
| ||| ||| ||||||||| | | || || || | || | ||||| ||||||| |
Sbjct 29328 GAGTTTGTT-ATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCTTCTGCTGTCCAGA 29386
Query 34099 ATGATGCCTCTGCCTTTTTATACATATTCCAGAT 34132
| |||||||| |||||||| ||||| | ||||||
Sbjct 29387 AAGATGCCTCGGCCTTTTTGTACATTTGCCAGAT 29420
Score = 84.2 bits (92), Expect = 3e-11
Identities = 292/453 (64%), Gaps = 2/453 (0%)
Strand=Plus/Plus
Query 33275 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 33334
|| |||||| || || ||||| ||||| || | || ||||| || || || || ||
Sbjct 28504 AGCCATAACACCAGCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCC 28563
Query 33335 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAA 33394
| | | || || || |||||||| || || || |||| | ||||| | || |
Sbjct 28564 TGCTAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTT 28623
Query 33395 TCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCAT-TTCAC 33453
|| | || | | | ||| |||||||| || || ||| ||||||| ||| |
Sbjct 28624 ACCAAGAGCAACTAGGAGACGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGC 28683
Query 33454 AATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATA 33513
||||| || | ||| | ||||||||| | || | ||||||||||| || |
Sbjct 28684 G-TTCATGCCAAGAAGTGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCGA 28742
Query 33514 CCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAA 33573
| || | ||| || | | | || | | | || || | || || || |
Sbjct 28743 CAGCCTCTGTGATGACATCTTGGACAGCCTGCTTGCTTGGACGGTGCTTCAAGTGGGAGA 28802
Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633
| | | || ||||| ||| || ||||| || || | || | || || || |
Sbjct 28803 AGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGA 28862
Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693
| ||||| || | ||| | ||||||||| || ||||| || || ||||||||||||||
Sbjct 28863 AAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCAC 28922
Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33726
|||||||| || || || |||||||| ||||
Sbjct 28923 TGAAGAAGATGCCCTCAACAGCAGCAAAAGCAA 28955
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629789179480800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |