Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq60 251 1e-61 >seq60 Length=14677 Score = 251 bits (278), Expect = 1e-61 Identities = 1146/1780 (64%), Gaps = 43/1780 (2%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 ||||| ||||| || |||||||||| | ||||| || ||||||||||| || || ||| Sbjct 7937 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 7996 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || | |||| ||| ||||||||| || | ||| | || ||| || Sbjct 7997 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 8056 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 || || ||||| ||||| || || | ||||| || | || || ||||||| | Sbjct 8057 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 8116 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957 || || ||| | ||| ||||| | || || |||| | ||| || || |||||| | Sbjct 8117 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 8176 Query 78958 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014 || | | || ||||| || ||||| || || || || | ||||| || | || | Sbjct 8177 TTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCTGAC 8236 Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074 |||||| | ||| | | | | || || || ||||| ||||| ||||||||| Sbjct 8237 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 8296 Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134 | ||| || | |||| ||| || ||| || |||||||| | | || || || Sbjct 8297 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 8356 Query 79135 AAAATTTGAGCAGTTGATGCC-GTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 79193 | |||||||| || || || | ||||||||||| || || | ||||| || | | ||| Sbjct 8357 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 8415 Query 79194 GTATGATCTGATTTTATCTTTTAGAGAT-TCCCAATCCCAAAGATCAGACGGGACAACAT 79252 || | | |||| || | || || | ||||| |||||||| || | || ||| Sbjct 8416 GTGTTGTTTGATGG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 8474 Query 79253 TCCAAAGATCATATTGTAGAATACCGTTACTAG-CGTATGATCCTGTGTATGTTTCATAA 79311 ||| | ||| ||||| || || || | || | ||| ||| ||| || ||||| Sbjct 8475 CCCACATATCGTATTGAAGTTCGCCCTT-CGAGACAGGTGAGCCTTCGTAAGTCTCATAG 8533 Query 79312 GGTCCTTCCTTTTCGGCTAATTCACAACTCGCC-TCT-AATGCTCCGTAATAAATGGTTT 79369 | || || | || | || |||| | | | || || ||| ||||| |||| Sbjct 8534 GTACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTT 8591 Query 79370 CGAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGGCTAT-CAAATGGATAATTTAAGAG 79427 |||| || | | ||||| | |||| ||||| ||| || ||||||| |||| ||||| Sbjct 8592 CGAAGATTTGAATGTTGAGGTGCTTG-GCTTC-AGGTGATTCAAATGG-TAATCGAAGAG 8648 Query 79428 --AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 79485 || ||| || || || | ||||||||||| | | ||||||||| ||| | ||| Sbjct 8649 CCAAGAAA-GCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT- 8706 Query 79486 GAAATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCT 79544 | |||| | | ||||| | || || || || || || || || || || | || || Sbjct 8707 GCTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCT 8766 Query 79545 GACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATTA---- 79600 ||| | |||| || || | || || | ||||| | ||| || | | Sbjct 8767 GACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTC 8826 Query 79601 CAAACATGTTC--AACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 79658 || | ||||| | || | || |||| ||||| || || |||| | | | Sbjct 8827 CACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGA 8886 Query 79659 ATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATT 79718 |||| | ||||| ||||| | || | |||||| || | || | ||| || Sbjct 8887 GTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTT 8946 Query 79719 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778 ||||| ||||| || |||||||| ||||| ||||| ||| | || || || | |||| Sbjct 8947 GCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGC 9006 Query 79779 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGT-ATCTCTTTTCTC 79837 || | ||| | | ||| | | | || || || | |||| | |||| || Sbjct 9007 CTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGT---CTTGCGACCTCTACCTTC 9063 Query 79838 TTTCGTATTG-TGT-ATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGG 79895 ||| || | | ||| | ||| |||||||| || | ||||| | || ||||| Sbjct 9064 CTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGG 9123 Query 79896 ACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAG 79953 |||||| | || ||||| | | ||| || | | || ||| || || ||||| ||| Sbjct 9124 ACATTCATTGGGGCACATTAGTGTCCAATCCGCGT--TCTTTTCAACACGCTTCATGAAG 9181 Query 79954 AGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 80012 ||||| |||||||| | || ||| || ||||| | || | || || || || Sbjct 9182 AGATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCATG 9240 Query 80013 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 80072 |||||| ||| || |||||| | | || ||| | ||||| || || | || | || Sbjct 9241 GTTCTTTCGAAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGC 9300 Query 80073 CATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 80132 | | || || || |||||||| || || || | ||||||||| ||||| || |||| Sbjct 9301 AAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAAC 9360 Query 80133 TCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACT 80192 || | ||| || | || || ||||| |||| ||||| |||| ||| || ||| | Sbjct 9361 TCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGT 9420 Query 80193 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 80252 |||||| || | ||| ||||| || || || || |||||||||| | || || Sbjct 9421 GGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACA 9480 Query 80253 TCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACA 80312 | || | |||||||| || || || || || || || |||| | || || || || Sbjct 9481 TGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGCA 9540 Query 80313 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 80372 || | || | || || || || | ||||| || ||||| || || Sbjct 9541 TGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA 9600 Query 80373 CCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAA 80431 |||| | |||| || ||||| |||||||| || || ||||| || | |||| Sbjct 9601 GTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGAA 9659 Query 80432 TTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471 | || || || |||||||| | ||| || || || | ||| Sbjct 9660 TACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTC 9699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718236388120400