Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq60 194 2e-44 >seq60 Length=14677 Score = 194 bits (214), Expect = 2e-44 Identities = 1137/1786 (64%), Gaps = 55/1786 (3%) Strand=Plus/Plus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || |||||||| || | ||||||||| | ||||| || |||||||| || || || ||| Sbjct 7937 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 7996 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGCTAGGATCGGCTAT 70919 || | |||| ||| |||||||| || | ||| || | | || || || Sbjct 7997 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTG-TGGGGTCTTTCAT 8055 Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979 |||||| ||||| || || || || | ||||| || | || || ||||||| | Sbjct 8056 GTGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAAC 8115 Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 71039 || || ||| | ||| ||||| | || || |||| | ||| || || |||||| Sbjct 8116 AATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAAT 8175 Query 71040 GTTTGTA---TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096 ||| | | || ||||| || ||||| || || || || | || || || | || Sbjct 8176 GTTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCTGA 8235 Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156 ||||||| | ||| | | | | || || || ||||| ||||| |||||||| Sbjct 8236 CCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCC 8295 Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCC 71216 || ||| || | ||||| ||| || ||| || || ||||| | |||| || || Sbjct 8296 AGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACC 8355 Query 71217 CAAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGAC 71275 | |||||||| || || || | || |||||||| || || | | ||| || | | || Sbjct 8356 GAGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACAC 8414 Query 71276 CATGT-----GATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTAC 71330 | ||| ||| |||||| ||| || || |||| | |||||| || | ||| Sbjct 8415 CGTGTTGTTTGAT-GGATTT---CTTCAAGCTAT-CCCAGTCCCAAAGGTCGGTAGGTGT 8469 Query 71331 AACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAG-CGTATGATCCTGCATATGTAT 71389 ||| ||| || | || | ||| ||| | || || | Sbjct 8470 AACTCCCCACATATCGTATTGAAGTTCGCCCTT-CGAGACAGGTGAGCCTTCGTAAGTCT 8528 Query 71390 CGTATGGT--CCTTCTTTTTCGGCTAGTTCACAACTCGCC-TCT-AATGCTCCATAATAA 71445 | || ||| || || || | | | || |||| | | | || || | | ||| Sbjct 8529 CATA-GGTACCCAACTCCTTAG-CAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAA 8584 Query 71446 ATGGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAATT 71504 || |||||||| || | | ||||| | |||| ||||| || |||||||| |||| Sbjct 8585 ATAGTTTCGAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATGG-TAATC 8642 Query 71505 TAAGAG--AATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTC 71562 ||||| || ||| || || || | |||||||| || | | ||||||||| || | Sbjct 8643 GAAGAGCCAAGAAA-GCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGG 8701 Query 71563 TTATTAGAAATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 71621 ||| | |||| | | ||||| | || || || || || || || || || || | Sbjct 8702 AAATT-GCTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAA 8760 Query 71622 ATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCTCCCATC 71678 |||||||| | |||| || || | || || | ||||| | || | ||| Sbjct 8761 GTTTCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATT 8820 Query 71679 TAT-TACAAACACGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGC 71735 || | || | | ||| || |||| || |||| ||||| || || |||| | Sbjct 8821 CATGTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGG 8880 Query 71736 ATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 71795 | | |||| | |||||| ||||| | ||| | ||||| || | || | Sbjct 8881 GGCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTT 8940 Query 71796 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAAT 71855 ||| || ||||| ||||| || |||||||| ||||| || || ||| | || || || | Sbjct 8941 TTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGT 9000 Query 71856 CTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGT-ATCTCT 71914 |||| || | ||| | | ||| | | | || || || | |||| | |||| Sbjct 9001 TTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGT---CTTGCGACCTCT 9057 Query 71915 TTTCTCTTTCGTATTG-TGT-ATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAA 71972 || ||| || | | ||| | ||| |||||||| || | ||| | || Sbjct 9058 ACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAA 9117 Query 71973 TCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTC 72030 |||||||||||||| || ||||| | || ||| || | | || ||| || || ||| Sbjct 9118 CCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGT--TCTTTTCAACACGCTTC 9175 Query 72031 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTT 72089 || |||||||| |||||||| | || ||| || ||||| | || | || || || Sbjct 9176 ATGAAGAGATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTT 9234 Query 72090 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 72149 || |||||| ||| || |||||| | | || ||| | ||||| || || | || Sbjct 9235 GCCATGGTTCTTTCGAAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATA 9294 Query 72150 TATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 72209 | || | | || || || |||||||| || || || | ||||||||| ||||| || Sbjct 9295 GACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTT 9354 Query 72210 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 72269 |||||| | ||| || | || || ||||| ||| ||||| |||| ||| || Sbjct 9355 GAAAACTCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGC 9414 Query 72270 TCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329 ||| ||||||| || || ||| ||||| || || || || |||||||||| | Sbjct 9415 ACCAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCAT 9474 Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 72389 || ||| || | |||||||| || || || ||||| || ||| |||| | || || Sbjct 9475 AGCACATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAG 9534 Query 72390 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 72449 || || || | || | || || || || | ||||| || ||||| Sbjct 9535 GAAGCATGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTG 9594 Query 72450 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATT 72508 || || |||| | |||| || ||||| |||||||| || || ||||| || Sbjct 9595 TGTGAAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACC 9654 Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554 | || || || || || |||||||| | ||| || || || | ||| Sbjct 9655 G-TGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTC 9699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671108914843600