Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3070 125 1e-23 >seq3070 Length=35956 Score = 125 bits (138), Expect = 1e-23 Identities = 237/338 (70%), Gaps = 12/338 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||||||||| |||| || || ||||| | |||||| |||| || Sbjct 29420 ATCTGGCAAATGTACAAAAAGGCCGAGGCATCTTTCTGGACAGCAGAAGAGATCGACTTG 29361 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || |||||||| |||||||| | | | | ||| |||||| | || || || Sbjct 29360 TCAAAGGACCTTCACGATTGGAATAACAAACTCAATGATGATGAGCGCTATTTCATCTCT 29301 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACG 125197 ||| | | || ||||| || | ||||| ||||| |||||||| || | ||| || || Sbjct 29300 CACGTCCTCGCATTCTTCGCAGCATCCGACGGAATAGTCAACGAGAACCTTGTCGA-GCG 29242 Query 125198 ATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATG 125255 ||| | | |||| | || || |||| ||| ||||| ||||| |||||||| ||| Sbjct 29241 CTTCAGTGGTGAAGTTCA-AATCCCCGAGG-CTCGTTGCTTCTACGGTTTCCAAATTATG 29184 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC-- 125313 || ||||| | ||||| |||| |||||| || || || | |||||| || | Sbjct 29183 ATGGAGAATATCCACTCCGAAACATACTCTCTCCTCATCGATACATACATTAAGGAACAA 29124 Query 125314 -CGCAACGTAAACACATGCTCTTTAACGCAATCGACAC 125350 | ||||| |||| || ||||| || ||||| || || Sbjct 29123 GCCCAACG--AACATAT-CTCTTCAATGCAATTGAGAC 29089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741025759703600