Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq443 114 3e-20
>seq443
Length=6205
Score = 114 bits (126), Expect = 3e-20
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428
|| |||||||| || || ||||| |||||||| || || || | || |||||||||||
Sbjct 2910 TCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAG 2969
Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488
|| | | |||||| || || || || || || || || |||||||||| || |||||
Sbjct 2970 ATCAATCGCTGTTGGTCCGGTGGAATACCCTCCTTGTCTTGAATCTTTGACTTGACATTG 3029
Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548
|| | |||||| | ||| || || | |||||| ||||| || || | || || ||
Sbjct 3030 TCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCGGTCAAAGTCTTGACG 3089
Query 104549 AATATCTGCAT 104559
|| ||||||||
Sbjct 3090 AAGATCTGCAT 3100
Score = 100 bits (110), Expect = 7e-16
Identities = 137/189 (72%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | ||||| || || ||||| || ||||| | || | || |||
Sbjct 3629 AGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCT 3688
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| |||||||| || || || || | | |||||| || || || ||||| || ||||||
Sbjct 3689 TCAAGTTGTTTGCCCGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCC 3748
Query 104468 TGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|||||| ||||| ||||| || || | |||||||| | || ||||| || || || ||
Sbjct 3749 TGAATC-TTGCTCTTTACGTTGTCGATAGTATCGCTGGACTCGACCTCGAGGGTGATGGT 3807
Query 104527 CTTACCAGT 104535
||| || ||
Sbjct 3808 CTTGCCGGT 3816
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151345144225880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |