Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq65 105 6e-18 >seq65 Length=14011 Score = 105 bits (116), Expect = 6e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 5344 GTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGCACCACCCCGACATT 5403 ||| |||| ||| ||||| || ||| ||| |||| ||||||||||| |||| || | Sbjct 338 GTCGCCCTCCTTCACCTCGAAATCGGTGTCTCCGTGGTTAAACAGCAGCACCTTTACTTG 279 Query 5404 GCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAG 5463 || || || || | ||||| ||||| |||||| |||||| | ||||||| || || Sbjct 278 ACCCCGATAATCCGCATCGATCACGCCCGCGCCCGTGTCGATCATGTGTTTGGATGCTAG 219 Query 5464 GCCGGAACGTGGTGCTATGCGTCCGT 5489 |||||| || || ||||||||||||| Sbjct 218 GCCGGAGCGGGGAGCTATGCGTCCGT 193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447730195263200