Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq443 109 5e-19
seq1292 100 3e-16
>seq443
Length=6205
Score = 109 bits (120), Expect = 5e-19
Identities = 143/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||| | || ||||| ||||| | ||| || ||||||| ||| ||| ||
Sbjct 3347 CACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTC 3406
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|| ||||| || | ||||| || | ||| ||||| |||||||| || || ||||| |
Sbjct 3407 GAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATGCCCTCCTTGTCCTG 3466
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || | ||||||| | ||| ||||| | ||||| |||| |||||||| ||
Sbjct 3467 GATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTT 3526
Query 94978 TCCAGTAAGAGTTTTCAC 94995
||||||||||| || ||
Sbjct 3527 GCCAGTAAGAGTCTTGAC 3544
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||||||||| ||||| || | ||| ||||| | ||| || ||||||
Sbjct 2891 CACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTC 2950
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|| ||| ||||| ||||||| |||| || || || || |||||||| || ||||| |
Sbjct 2951 CAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGAATACCCTCCTTGTCTTG 3010
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
||| |||| |||||| | | | || || | || || || | || ||||| ||
Sbjct 3011 AATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTT 3070
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||| || | ||| || || |||||||||||
Sbjct 3071 TCCGGTCAAAGTCTTGACGAAGATCTGCAT 3100
>seq1292
Length=3705
Score = 100 bits (110), Expect = 3e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||||||| | ||| ||||||||||| | ||| || ||| | ||| ||| ||
Sbjct 1962 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCG 2021
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
|| || || ||| | ||||| | | ||||||||| || || || || || ||||| |
Sbjct 2022 AGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGG 2081
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || | |||||| | ||| || |||| | || || || | |||||||||||
Sbjct 2082 ATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTA 2141
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
|| || || ||||| || ||||||||||||
Sbjct 2142 CCCGTGAGGGTTTTGACGAAGATCTGCATG 2171
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448270970859600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |