Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq558 113 7e-21
seq112 109 9e-20
>seq558
Length=17460
Score = 113 bits (124), Expect = 7e-21
Identities = 86/99 (87%), Gaps = 2/99 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||||||||| |||| |||||| || ||||||||||| ||||| ||||| |||||
Sbjct 13791 GCTAAGCGTCATCGCAAGAT-TCTTCGTGACAACATCCAAGGTATCACAAAGCCTGCTAT 13849
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
| | ||||| ||||||||||| || ||||||||| ||||
Sbjct 13850 CAGACGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTC 13888
>seq112
Length=63704
Score = 109 bits (120), Expect = 9e-20
Identities = 85/99 (86%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| |||| ||| | | |||| ||||||||||| |||||||||||||||||
Sbjct 51057 GCCAAGCGTCACCGCAAGATTT-TGAGAGACAACATCCAAGGTATCACCAAGCCAGCTAT 50999
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
| | ||||| |||||||||||||| ||||||||| ||||
Sbjct 50998 CAGACGTCTTGCTCGTCGTGGTGGTGTCAAGCGTATCTC 50960
Score = 105 bits (116), Expect = 1e-18
Identities = 121/163 (74%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| ||||||| |||| ||| ||||||| |||||| || || |||| ||| |
Sbjct 50854 TGATCTACGAAGAGACCCGTGGTGTATTGAAGACCTTCCTTGAGGGTGTCATCCGTGACG 50795
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || ||| || ||||| || || ||||| |||||||||||| | || ||||||| |
Sbjct 50794 CCGTCACCTACACTGAGCATGCCAAGCGTAAAACTGTCACCTCCCTCGACGTCGTCTACG 50735
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698
| | || || |||||||||| |||| ||||| || ||||
Sbjct 50734 CCCTCAAGCGCCAAGGCCGTACCCTTTACGGTTTCGGTGGTTA 50692
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79071899351730
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |