Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq60 250 3e-61
seq3070 107 2e-18
>seq60
Length=14677
Score = 250 bits (276), Expect = 3e-61
Identities = 1141/1781 (64%), Gaps = 45/1781 (3%)
Strand=Plus/Plus
Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054
||||| ||||| || |||||||||| | ||||| || ||||||||||| || || |||
Sbjct 7937 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 7996
Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114
|| | |||| ||| |||||||| || | ||| | || ||| ||
Sbjct 7997 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 8056
Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174
|| || ||||| ||||| || || | ||||| || | || || ||||||| |
Sbjct 8057 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 8116
Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234
|| || ||| | ||| ||||| | || || |||| | ||| || || |||||| |
Sbjct 8117 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 8176
Query 62235 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291
|| | | || ||||| || ||||| || || || || | ||||| || | || |
Sbjct 8177 TTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCTGAC 8236
Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351
|||||| | ||| | | | | || || || ||||| ||||| |||||||||
Sbjct 8237 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 8296
Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62411
| ||| || | |||| ||| || ||| || || ||||| | |||| || ||
Sbjct 8297 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 8356
Query 62412 AAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62470
| |||||||| || || || | || |||||||| || || | ||||| || | | |||
Sbjct 8357 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 8415
Query 62471 GTATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 62529
|| | | |||| || | || || | ||||| | |||||| || | ||| |||
Sbjct 8416 GTGTTGTTTGATGG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 8474
Query 62530 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 62589
||| || || || | | || ||| | || || || || |
Sbjct 8475 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAAGTCTCATAGG 8534
Query 62590 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCC-TCT-AATGCACCGTAATAAATGGTTTC 62647
|| || || ||| | || |||| | | | || ||| ||| ||||| |||||
Sbjct 8535 TACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 8592
Query 62648 GAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTAT-CAAATGGATAATTTAAGAG- 62704
|||||| | | || || | |||| ||||| ||| || ||||||| |||| |||||
Sbjct 8593 GAAGATTTGAATGTTGAGGTGCTTG-GCTTC-AGGTGATTCAAATGG-TAATCGAAGAGC 8649
Query 62705 -AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62763
|| ||| || || || | ||||||||||| | | ||||||||| ||| | ||| |
Sbjct 8650 CAAGAAA-GCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-G 8707
Query 62764 AGATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62822
|||| | | ||||| | || || || || || || || || || || | ||||||
Sbjct 8708 CTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTG 8767
Query 62823 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT-TAC 62878
|||| |||| || || | || || | ||||| | || | ||| || | |
Sbjct 8768 ACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCC 8827
Query 62879 AAACATGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62936
| | ||||| || |||| || |||| ||||| || || |||| | | |
Sbjct 8828 ACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAG 8887
Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996
|||| | || || ||||| | ||| | || || || | || | ||| ||
Sbjct 8888 TATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTG 8947
Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63056
||||| ||||| || |||||||| ||||| ||||||||| | || || || | ||||
Sbjct 8948 CTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGCC 9007
Query 63057 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA----GATTTGTATCTCCTTTC 63112
|| | ||| | | ||| | | | || || || | || | || || | |||
Sbjct 9008 TCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTTC 9067
Query 63113 TCTT---TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 63169
|| | || |||| | | | ||| |||||||| || | |||| |||| ||
Sbjct 9068 TCATAACTCTCATAGAG------AGC-TTCAAACTCGTCGCCATATACATCAGCCAACCC 9120
Query 63170 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63229
||||||||||| || ||||| | | ||| || ||| | | || || ||||| ||
Sbjct 9121 AGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAA 9180
Query 63230 GAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 63288
|||||| |||||||| | || ||| || ||||| | || | ||| || || ||
Sbjct 9181 GAGATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCAT 9239
Query 63289 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63348
|||||| ||| || |||||| | | || ||| | ||||| || || | || | |
Sbjct 9240 GGTTCTTTCGAAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTG 9299
Query 63349 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63408
| | | ||||| || |||||||| || || || | ||||||||| ||||| || |||
Sbjct 9300 CAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAA 9359
Query 63409 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCAC 63468
||| | ||| || | || ||||| || |||| |||||||||| ||| || |||
Sbjct 9360 CTCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAG 9419
Query 63469 TGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63528
||||||| || | ||| ||||| || || || || |||||||||| | || |
Sbjct 9420 TGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCAC 9479
Query 63529 ATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63588
|| || | || ||||| ||||| || || || || || |||| | || || || |
Sbjct 9480 ATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGC 9539
Query 63589 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63648
| || | || | || || || || | ||||| || ||||| || |
Sbjct 9540 ATGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGA 9599
Query 63649 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGA 63707
| |||| | || | || ||||| |||||||| || || ||||| || | |||
Sbjct 9600 AGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGA 9658
Query 63708 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748
|| || || || |||||||| | ||| || || || | |||
Sbjct 9659 ATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTC 9699
>seq3070
Length=35956
Score = 107 bits (118), Expect = 2e-18
Identities = 297/453 (66%), Gaps = 2/453 (0%)
Strand=Plus/Plus
Query 32997 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 33056
|| |||||| || || ||||| ||||| || | || ||||| || || || || ||
Sbjct 28504 AGCCATAACACCAGCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCC 28563
Query 33057 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAA 33116
| | | || || || |||||||| || || || |||| | || || | || |
Sbjct 28564 TGCTAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTT 28623
Query 33117 TCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCAT-TTCAC 33175
|| | || | | | ||| |||||||| || || ||| ||||||| ||| |
Sbjct 28624 ACCAAGAGCAACTAGGAGACGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGC 28683
Query 33176 AATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATA 33235
||||| || | |||| | ||||||||| | || | ||||||||||| || |
Sbjct 28684 G-TTCATGCCAAGAAGTGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCGA 28742
Query 33236 CCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAA 33295
| || ||||| || | | | || | | | || || | ||| || || |
Sbjct 28743 CAGCCTCTGTGATGACATCTTGGACAGCCTGCTTGCTTGGACGGTGCTTCAAGTGGGAGA 28802
Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355
| | | || ||||| ||| || ||||| || || | || || || ||||| |
Sbjct 28803 AGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGA 28862
Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415
| ||||| || | ||| | ||||||||| || ||||| || || |||||||||||||||
Sbjct 28863 AAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCAC 28922
Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33448
|||||||| || || || |||||||| ||||
Sbjct 28923 TGAAGAAGATGCCCTCAACAGCAGCAAAAGCAA 28955
Score = 91.5 bits (100), Expect = 2e-13
Identities = 223/334 (67%), Gaps = 7/334 (2%)
Strand=Plus/Plus
Query 33526 GTTTCTATGGCATTAAAGAGATA-GtttttttCATTACTATCTTTAACATAAGTATCGAT 33584
|| || || ||||| |||||||| ||| || | | || |||| || ||||||||
Sbjct 29089 GTCTCAATTGCATTGAAGAGATATGTTCGTTGGGCTTGT-TCCTTAATGTATGTATCGAT 29147
Query 33585 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 33644
| ||| || |||| || || || || || || || || || |||||||| ||
Sbjct 29148 GAGGAGAGAGTATGTTTCGGAGTGGATATTCTCCATCATAATTTGGAAACCGTAGAAGCA 29207
Query 33645 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTAT 33704
| |||||||| || || ||||| || || || || | | || || || |||||
Sbjct 29208 ACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGGTTCTCGTTGACTAT 29267
Query 33705 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC----TG 33760
|||||| ||||| || || || | || || || ||||| || || |
Sbjct 29268 TCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAGCGCTCATCATCATT 29327
Query 33761 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAA 33820
| ||| ||| ||||||||| | | || || || | || | ||||| ||||||| |
Sbjct 29328 GAGTTTGTT-ATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCTTCTGCTGTCCAGA 29386
Query 33821 ATGATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854
| |||||||| |||||||| ||||| | ||||||
Sbjct 29387 AAGATGCCTCGGCCTTTTTGTACATTTGCCAGAT 29420
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622919089507600
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