Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq60 250 3e-61 seq3070 107 2e-18 >seq60 Length=14677 Score = 250 bits (276), Expect = 3e-61 Identities = 1141/1781 (64%), Gaps = 45/1781 (3%) Strand=Plus/Plus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 ||||| ||||| || |||||||||| | ||||| || ||||||||||| || || ||| Sbjct 7937 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 7996 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || | |||| ||| |||||||| || | ||| | || ||| || Sbjct 7997 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 8056 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 || || ||||| ||||| || || | ||||| || | || || ||||||| | Sbjct 8057 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 8116 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234 || || ||| | ||| ||||| | || || |||| | ||| || || |||||| | Sbjct 8117 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 8176 Query 62235 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291 || | | || ||||| || ||||| || || || || | ||||| || | || | Sbjct 8177 TTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCTGAC 8236 Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351 |||||| | ||| | | | | || || || ||||| ||||| ||||||||| Sbjct 8237 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 8296 Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62411 | ||| || | |||| ||| || ||| || || ||||| | |||| || || Sbjct 8297 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 8356 Query 62412 AAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62470 | |||||||| || || || | || |||||||| || || | ||||| || | | ||| Sbjct 8357 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 8415 Query 62471 GTATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 62529 || | | |||| || | || || | ||||| | |||||| || | ||| ||| Sbjct 8416 GTGTTGTTTGATGG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 8474 Query 62530 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 62589 ||| || || || | | || ||| | || || || || | Sbjct 8475 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAAGTCTCATAGG 8534 Query 62590 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCC-TCT-AATGCACCGTAATAAATGGTTTC 62647 || || || ||| | || |||| | | | || ||| ||| ||||| ||||| Sbjct 8535 TACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 8592 Query 62648 GAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTAT-CAAATGGATAATTTAAGAG- 62704 |||||| | | || || | |||| ||||| ||| || ||||||| |||| ||||| Sbjct 8593 GAAGATTTGAATGTTGAGGTGCTTG-GCTTC-AGGTGATTCAAATGG-TAATCGAAGAGC 8649 Query 62705 -AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62763 || ||| || || || | ||||||||||| | | ||||||||| ||| | ||| | Sbjct 8650 CAAGAAA-GCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-G 8707 Query 62764 AGATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62822 |||| | | ||||| | || || || || || || || || || || | |||||| Sbjct 8708 CTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTG 8767 Query 62823 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT-TAC 62878 |||| |||| || || | || || | ||||| | || | ||| || | | Sbjct 8768 ACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCC 8827 Query 62879 AAACATGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62936 | | ||||| || |||| || |||| ||||| || || |||| | | | Sbjct 8828 ACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAG 8887 Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996 |||| | || || ||||| | ||| | || || || | || | ||| || Sbjct 8888 TATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTG 8947 Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63056 ||||| ||||| || |||||||| ||||| ||||||||| | || || || | |||| Sbjct 8948 CTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGCC 9007 Query 63057 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA----GATTTGTATCTCCTTTC 63112 || | ||| | | ||| | | | || || || | || | || || | ||| Sbjct 9008 TCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTTC 9067 Query 63113 TCTT---TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 63169 || | || |||| | | | ||| |||||||| || | |||| |||| || Sbjct 9068 TCATAACTCTCATAGAG------AGC-TTCAAACTCGTCGCCATATACATCAGCCAACCC 9120 Query 63170 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63229 ||||||||||| || ||||| | | ||| || ||| | | || || ||||| || Sbjct 9121 AGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAA 9180 Query 63230 GAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 63288 |||||| |||||||| | || ||| || ||||| | || | ||| || || || Sbjct 9181 GAGATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCAT 9239 Query 63289 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63348 |||||| ||| || |||||| | | || ||| | ||||| || || | || | | Sbjct 9240 GGTTCTTTCGAAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTG 9299 Query 63349 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63408 | | | ||||| || |||||||| || || || | ||||||||| ||||| || ||| Sbjct 9300 CAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAA 9359 Query 63409 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCAC 63468 ||| | ||| || | || ||||| || |||| |||||||||| ||| || ||| Sbjct 9360 CTCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAG 9419 Query 63469 TGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63528 ||||||| || | ||| ||||| || || || || |||||||||| | || | Sbjct 9420 TGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCAC 9479 Query 63529 ATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63588 || || | || ||||| ||||| || || || || || |||| | || || || | Sbjct 9480 ATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGC 9539 Query 63589 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63648 | || | || | || || || || | ||||| || ||||| || | Sbjct 9540 ATGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGA 9599 Query 63649 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGA 63707 | |||| | || | || ||||| |||||||| || || ||||| || | ||| Sbjct 9600 AGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGA 9658 Query 63708 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748 || || || || |||||||| | ||| || || || | ||| Sbjct 9659 ATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTC 9699 >seq3070 Length=35956 Score = 107 bits (118), Expect = 2e-18 Identities = 297/453 (66%), Gaps = 2/453 (0%) Strand=Plus/Plus Query 32997 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 33056 || |||||| || || ||||| ||||| || | || ||||| || || || || || Sbjct 28504 AGCCATAACACCAGCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCC 28563 Query 33057 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAA 33116 | | | || || || |||||||| || || || |||| | || || | || | Sbjct 28564 TGCTAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTT 28623 Query 33117 TCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCAT-TTCAC 33175 || | || | | | ||| |||||||| || || ||| ||||||| ||| | Sbjct 28624 ACCAAGAGCAACTAGGAGACGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGC 28683 Query 33176 AATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATA 33235 ||||| || | |||| | ||||||||| | || | ||||||||||| || | Sbjct 28684 G-TTCATGCCAAGAAGTGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCGA 28742 Query 33236 CCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAA 33295 | || ||||| || | | | || | | | || || | ||| || || | Sbjct 28743 CAGCCTCTGTGATGACATCTTGGACAGCCTGCTTGCTTGGACGGTGCTTCAAGTGGGAGA 28802 Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 | | | || ||||| ||| || ||||| || || | || || || ||||| | Sbjct 28803 AGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGA 28862 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | ||||| || | ||| | ||||||||| || ||||| || || ||||||||||||||| Sbjct 28863 AAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCAC 28922 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33448 |||||||| || || || |||||||| |||| Sbjct 28923 TGAAGAAGATGCCCTCAACAGCAGCAAAAGCAA 28955 Score = 91.5 bits (100), Expect = 2e-13 Identities = 223/334 (67%), Gaps = 7/334 (2%) Strand=Plus/Plus Query 33526 GTTTCTATGGCATTAAAGAGATA-GtttttttCATTACTATCTTTAACATAAGTATCGAT 33584 || || || ||||| |||||||| ||| || | | || |||| || |||||||| Sbjct 29089 GTCTCAATTGCATTGAAGAGATATGTTCGTTGGGCTTGT-TCCTTAATGTATGTATCGAT 29147 Query 33585 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 33644 | ||| || |||| || || || || || || || || || |||||||| || Sbjct 29148 GAGGAGAGAGTATGTTTCGGAGTGGATATTCTCCATCATAATTTGGAAACCGTAGAAGCA 29207 Query 33645 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTAT 33704 | |||||||| || || ||||| || || || || | | || || || ||||| Sbjct 29208 ACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGGTTCTCGTTGACTAT 29267 Query 33705 TCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC----TG 33760 |||||| ||||| || || || | || || || ||||| || || | Sbjct 29268 TCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAGCGCTCATCATCATT 29327 Query 33761 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAA 33820 | ||| ||| ||||||||| | | || || || | || | ||||| ||||||| | Sbjct 29328 GAGTTTGTT-ATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCTTCTGCTGTCCAGA 29386 Query 33821 ATGATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854 | |||||||| |||||||| ||||| | |||||| Sbjct 29387 AAGATGCCTCGGCCTTTTTGTACATTTGCCAGAT 29420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622919089507600