Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1292 98.7 1e-15 seq443 96.9 3e-15 seq3070 95.1 1e-14 >seq1292 Length=3705 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| | || || ||| | |||||| |||| | ||||| Sbjct 2170 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 2111 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||||||| | ||||| ||||| ||||| || || || || || ||||| Sbjct 2110 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 2051 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || || | || |||||| ||||||||||||| | | | | |||||| ||| Sbjct 2050 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 1991 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| ||||| ||| | || ||||||| Sbjct 1990 ATCCAAAAGGAATCCACTCTTCACTTGGTCCT 1959 >seq443 Length=6205 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | ||||| ||||| ||||| || || || ||||| ||||| Sbjct 3497 CGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCA 3438 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 |||| | | || | || || |||||||||||||||| | | | | | |||||||| || Sbjct 3437 ACAACGTTTGATCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAA 3378 Query 26948 CATTCAAAAAGAATCTAC 26965 ||| ||||||||||| || Sbjct 3377 CATCCAAAAAGAATCCAC 3360 Score = 93.3 bits (102), Expect = 4e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 26805 ATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 26864 |||||| |||| | || || | ||| || ||||| | || || |||||| || Sbjct 3804 ATCACCCTCGAGGTCGAGTCCAGCGATACTATCGACAACGTAAAGAGCAAGATTCAGGAT 3745 Query 26865 AAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT 26924 || || || || || || || ||||| | | || | || ||||||||||| |||||| Sbjct 3744 AAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCGGGCAAACAACTTGAAGAT 3685 Query 26925 GATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 | | | | | |||||||| ||||||||||| || |||||| ||||||| ||||| Sbjct 3684 GGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTACTCTCCATCTCGTCCT 3629 >seq3070 Length=35956 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 120325 GCTCGATGATGTTAGTGTTCACGATGACGTCGGCGGCAGCGAAAAACGCGAGAACGTGCT 120384 |||||| | ||| ||| || || |||||| || ||||| || ||||| ||||| Sbjct 29243 GCTCGACAAGGTTCTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAG 29302 Query 120385 TAAGAAAAAATCGTTCTTTATCGTTCAGTTTTTTGTTCCAATCGTCAAAGTCCTTGGACA 120444 | ||| | || || | ||| || ||||| || |||||||||| || |||||| |||| Sbjct 29303 AGATGAAATAGCGCTCATCATCATTGAGTTTGTTATTCCAATCGTGAAGGTCCTTTGACA 29362 Query 120445 TGTCGATCTCTTCGACTTTCCAGTGACAATCGACCGCTTTCTTGTACGATTGCCAGA 120501 |||||||||||| || ||||| | | | | || || |||||| |||||||| Sbjct 29363 AGTCGATCTCTTCTGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACATTTGCCAGA 29419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478640800359200