Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq60 297 5e-75
seq3592 98.7 3e-15
seq41 91.5 4e-13
>seq60
Length=14677
Score = 297 bits (328), Expect = 5e-75
Identities = 1158/1793 (65%), Gaps = 48/1793 (3%)
Strand=Plus/Minus
Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450
||||||| ||||| | ||| ||| ||||| ||| || |||| | ||| |||
Sbjct 9756 TTCGGATTCAAGACCCTCGAGCGATCGTACCTTCTTCGACTCGATGGAAAAGTTGCAGAA 9697
Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510
|| || || || ||| | ||||||||||| ||||||| || | ||| | || |
Sbjct 9696 CGTCCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGC 9637
Query 363511 GCGATTGAAACATATAAGCTTCTAAGTGCT-CGTGTA-TTCACGCACGCCACGCCAACAA 363568
|| ||||| || || || ||| | || | | || ||||| |||||| | || |||
Sbjct 9636 GCCATTGAGACCTACAACCTTAT--GTCCAACAAATACTTCACACACGCCTCCCCTACAC 9579
Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628
| | | ||||| || | | | ||| | || || ||||| || | | |||||||
Sbjct 9578 TTTTCTCCGCTGGTACACCACAAGCTCAGCTTTCATCATGCTTCCTCATTGATATGAAGG 9519
Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688
| || || || ||||| | ||| || || |||| |||||| | || || || ||||
Sbjct 9518 AGGACAGTATTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATG 9459
Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAA-CAGTTACATTCGCGG 363746
| || || |||||| | || |||| | ||||| || | || ||||| |||
Sbjct 9458 CTGGAGGTATTGGTCTCAACATTCACAGAATCCGTGCCACTGGTGCA--TACATCGCCGG 9401
Query 363747 CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAG 363806
|| || |||| || || | || |||||||| || || || |||| ||||| ||
Sbjct 9400 TACCAACGGTAACTCCAACGGCATCGTACCCATGCTACGAGTTTTCAACAACACTGCTAG 9341
Query 363807 GTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCA 363866
||||||||||| |||||| ||||| || || ||||| | ||||| ||||||
Sbjct 9340 ATACGTCGACCAAGGTGGAAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTG 9281
Query 363867 TCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCG 363926
|| || ||| |||| ||||| || || || || || ||| || || || ||| | ||
Sbjct 9280 GCACGCAGATGTTTTCGAGTTCCTGGACCTTCGAAAGAACCATGGCAAGGAAGAAGTCCG 9221
Query 363927 TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGG--AG 363984
|| |||||||| |||||||| | ||| || | || | || |||||||| || | |
Sbjct 9220 CGCCCGTGATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAA 9161
Query 363985 GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGG 364044
| | | | ||||| |||| | ||||| | |||||||| || | | |||||||
Sbjct 9160 GAACG--CGGATTGGACACTAATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATAT 9103
Query 364045 GGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACA 364104
|| ||||| | || ||||| || || | ||||| ||| || | | ||| |||||
Sbjct 9102 GGCGACGAGTTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAGGTCGCAAGACC 9043
Query 364105 ATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCC 364164
|| || || ||||| |||| |||| | || | || | ||||| |||| ||
Sbjct 9042 ATCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACCGAGACCGGAAATCCA 8983
Query 364165 TATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATT 364224
| ||| | ||||| ||| | |||||| ||| |||||| || |||| || || |||
Sbjct 8982 TTCATGCTTTACAAGGATGCATGCAACAAGAAGAGCAACCAAAAGAACCTCGGCACCATT 8923
Query 364225 CAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGT 364283
| |||| ||| | || || || ||| | |||||| | || || || || ||
Sbjct 8922 C-GCAGCTCCAATTTGTGCACAGAAATTGTCGAATACTCTGCCCCAGATGAAGTCGCTTG 8864
Query 364284 ATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTG------TAAAAGATGGTACTTTTGA 364337
|||||| | || || || || || || | |||| | || || || |||| ||
Sbjct 8863 CTGTAACTTGGCTTCCATTGCTCTCCCAACATTTGTGGACATGAATGAGGGAACTTACGA 8804
Query 364338 CCACCAGCATCTTTATGACGTAACCTATCATGCTACTTG---CAATCTCG-ACAAGGTTA 364393
||| | ||| | || || || ||| | | ||| || || | ||||| | |
Sbjct 8803 TTTCCAAAAGCTTCACGAGGTTAC---TCAAG-TCGTTGTCAGAAACTTGAACAAGATCA 8748
Query 364394 TCGACAAGAATTATTATCCAATTCCTGAAGCC-GAGCGTTCTAATATGCGTCATCGCCCG 364452
| |||| || || || || | || || ||| || | | ||| | |||||||| ||
Sbjct 8747 TTGACATCAACTACTACCCCGTCCCAGAGGCCAGAAAGAGC-AATTTCCGTCATCGACCT 8689
Query 364453 ATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTC-AAGA-TGGCATTTG 364510
|| | | | ||||| || || || || || | ||| || |||| || | ||||||
Sbjct 8688 ATCGCTGTCGGTGTTCAAGGTCTTGCCGATGCTTTCTTG--GCTCTTCGATTACCATTTG 8631
Query 364511 ATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAA 364570
| || ||||| || || || | | ||||| ||||| || || || ||
Sbjct 8630 AATCACCTGAAGCCAAGCACCTCAACATTCAAATCTTCGAAACTATTTACCACGCTGCTT 8571
Query 364571 TGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCC 364630
|||| | || ||| | || || ||| | || ||||| || || || |
Sbjct 8570 TGACATCGTCCGTTGAGATTGCTAAGGAGTTGGGTACCTATGAGACTTACGAAGGCTCAC 8511
Query 364631 CTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGA 364690
|| | ||| |||| || | || | ||| | ||| || || || | | || |||
Sbjct 8510 CTGTCTCGAAGGGCGAACTTCAATACGATATGTGGGGAGTTACACCTACCGACCTTTGGG 8451
Query 364691 ACTGGGATACGCT--ACG--TTCCAACGTTAAGAAGCATGGTACTCGCAAC---TCCCTC 364743
||||||||| ||| | | |||| | || | || ||| |||||| | |||
Sbjct 8450 ACTGGGATA-GCTTGAAGAAATCCA---TCAAACAACACGGTGTCCGCAACAGTTTGCTC 8395
Query 364744 GTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTC 364803
||| || || ||||| || || || | || || ||||| ||||||||||||
Sbjct 8394 GTT---GCTCCTATGCCAACAGCCAGCACCTCTCAAATTCTCGGTTTCAACGAGTGCTTT 8338
Query 364804 GAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTT 364863
||||| | || || | || || || || || | | |||||||| | || |||
Sbjct 8337 GAACCATACACTTCTAACATCTACTCTCGTCGTGTCTTGGCTGGAGAATTCCAAGTTGTT 8278
Query 364864 AATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAAC 364923
|| | || ||||||||||| |||| || | ||| |||| ||||||||||
Sbjct 8277 AACCCATGGCTGCTCAAGGATCTTGTCGACATGGGATTATGGTCAGACAACATGAAGAAC 8218
Query 364924 TATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAG 364983
|||||||| | ||||||| | || |||||||| |||||| || | |||
Sbjct 8217 CGCATCATCGCTGACGGTGGTTCTATTCAAAACATTCCCAACATTCCAGCTGACATCAAG 8158
Query 364984 CCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGAT 365043
| ||||||| ||||| ||||| ||||| ||||| | || | ||||| || |||
Sbjct 8157 GCACTTTACAAGACCGTCTGGGAGATTTCTCAACGAACAATTGTTCAAATGGCCGCTGAT 8098
Query 365044 CGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCC 365103
|| ||||| ||| | ||| || || | ||| | ||||| | || ||
Sbjct 8097 CGTGGTGCCTTTGTTGACCAGTCACAATCAATGAACATTCACATGAAAGACCCCACAATG 8038
Query 365104 GCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156
| |||| |||| |||||||||||| ||| ||||||| ||||| ||||| ||
Sbjct 8037 GGCAAGATTACTTCCATGCATTTCGCCGGTTGGAAATTGGGTCTCAAGACCGG 7985
>seq3592
Length=24835
Score = 98.7 bits (108), Expect = 3e-15
Identities = 102/129 (79%), Gaps = 6/129 (5%)
Strand=Plus/Minus
Query 111420 GTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATT-CAGTTGGTCTTGTCGA 111478
|||||||| ||||| || |||||||| || || ||||||||| ||| | |||| | |
Sbjct 18980 GTAAAAATCTGGGACGGCAATGGATCGCGCGAATTTCTAGATAGCAGAGG--CTTGAC-A 18924
Query 111479 CAACG--AAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCA 111536
|| || ||| |||||||| || ||||| || || ||||||||||| |||||||||||
Sbjct 18923 CACCGTGAAGTTGGTGATCTTGGGCCAGTCTATGGCTTTCAATGGCGACACTTTGGTGCC 18864
Query 111537 GACTACAAA 111545
|| ||||||
Sbjct 18863 GAATACAAA 18855
>seq41
Length=27402
Score = 91.5 bits (100), Expect = 4e-13
Identities = 127/178 (71%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 65840 CATACTTAAACTGCACGACCATTCCTTGTGCGTTACGAATCGTTCCGTCATAATTGCACA 65899
||||| ||||||||||| || ||| ||| || | ||| |||||||| || ||
Sbjct 16618 CATACACAAACTGCACGATGTCGCCAAGTGAGTTTCGGACCGTACCGTCATATTTCGCCA 16677
Query 65900 TATTATCTTCACTTGCCTTTACAAGACAACGCTGGATGTAACCACTGTTTGCAGTTTTTA 65959
| ||||||| ||||| ||||||| ||| || ||||||||| | | ||| || || |
Sbjct 16678 TGACATCTTCAAGAGCCTTGACAAGACGACGTTGAATGTAACCAGTTTCTGCGGTCTTGA 16737
Query 65960 CCGCGGTATCAACGAGACCTTCACGCCCGGACATTGCAGAAAAGAAAAACTCAGTCGG 66017
| || ||||| | | ||||||||| || | ||| || ||||| || ||||| ||
Sbjct 16738 CTGCAGTATCGATCAAACCTTCACGACCAGCCATGGCGTGGAAGAAGAATTCAGTGGG 16795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303293315823020
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