Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq60 297 5e-75 seq3592 98.7 3e-15 seq41 91.5 4e-13 >seq60 Length=14677 Score = 297 bits (328), Expect = 5e-75 Identities = 1158/1793 (65%), Gaps = 48/1793 (3%) Strand=Plus/Minus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450 ||||||| ||||| | ||| ||| ||||| ||| || |||| | ||| ||| Sbjct 9756 TTCGGATTCAAGACCCTCGAGCGATCGTACCTTCTTCGACTCGATGGAAAAGTTGCAGAA 9697 Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510 || || || || ||| | ||||||||||| ||||||| || | ||| | || | Sbjct 9696 CGTCCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGC 9637 Query 363511 GCGATTGAAACATATAAGCTTCTAAGTGCT-CGTGTA-TTCACGCACGCCACGCCAACAA 363568 || ||||| || || || ||| | || | | || ||||| |||||| | || ||| Sbjct 9636 GCCATTGAGACCTACAACCTTAT--GTCCAACAAATACTTCACACACGCCTCCCCTACAC 9579 Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628 | | | ||||| || | | | ||| | || || ||||| || | | ||||||| Sbjct 9578 TTTTCTCCGCTGGTACACCACAAGCTCAGCTTTCATCATGCTTCCTCATTGATATGAAGG 9519 Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688 | || || || ||||| | ||| || || |||| |||||| | || || || |||| Sbjct 9518 AGGACAGTATTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATG 9459 Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAA-CAGTTACATTCGCGG 363746 | || || |||||| | || |||| | ||||| || | || ||||| ||| Sbjct 9458 CTGGAGGTATTGGTCTCAACATTCACAGAATCCGTGCCACTGGTGCA--TACATCGCCGG 9401 Query 363747 CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAG 363806 || || |||| || || | || |||||||| || || || |||| ||||| || Sbjct 9400 TACCAACGGTAACTCCAACGGCATCGTACCCATGCTACGAGTTTTCAACAACACTGCTAG 9341 Query 363807 GTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCA 363866 ||||||||||| |||||| ||||| || || ||||| | ||||| |||||| Sbjct 9340 ATACGTCGACCAAGGTGGAAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTG 9281 Query 363867 TCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCG 363926 || || ||| |||| ||||| || || || || || ||| || || || ||| | || Sbjct 9280 GCACGCAGATGTTTTCGAGTTCCTGGACCTTCGAAAGAACCATGGCAAGGAAGAAGTCCG 9221 Query 363927 TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGG--AG 363984 || |||||||| |||||||| | ||| || | || | || |||||||| || | | Sbjct 9220 CGCCCGTGATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAA 9161 Query 363985 GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGG 364044 | | | | ||||| |||| | ||||| | |||||||| || | | ||||||| Sbjct 9160 GAACG--CGGATTGGACACTAATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATAT 9103 Query 364045 GGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACA 364104 || ||||| | || ||||| || || | ||||| ||| || | | ||| ||||| Sbjct 9102 GGCGACGAGTTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAGGTCGCAAGACC 9043 Query 364105 ATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCC 364164 || || || ||||| |||| |||| | || | || | ||||| |||| || Sbjct 9042 ATCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACCGAGACCGGAAATCCA 8983 Query 364165 TATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATT 364224 | ||| | ||||| ||| | |||||| ||| |||||| || |||| || || ||| Sbjct 8982 TTCATGCTTTACAAGGATGCATGCAACAAGAAGAGCAACCAAAAGAACCTCGGCACCATT 8923 Query 364225 CAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGT 364283 | |||| ||| | || || || ||| | |||||| | || || || || || Sbjct 8922 C-GCAGCTCCAATTTGTGCACAGAAATTGTCGAATACTCTGCCCCAGATGAAGTCGCTTG 8864 Query 364284 ATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTG------TAAAAGATGGTACTTTTGA 364337 |||||| | || || || || || || | |||| | || || || |||| || Sbjct 8863 CTGTAACTTGGCTTCCATTGCTCTCCCAACATTTGTGGACATGAATGAGGGAACTTACGA 8804 Query 364338 CCACCAGCATCTTTATGACGTAACCTATCATGCTACTTG---CAATCTCG-ACAAGGTTA 364393 ||| | ||| | || || || ||| | | ||| || || | ||||| | | Sbjct 8803 TTTCCAAAAGCTTCACGAGGTTAC---TCAAG-TCGTTGTCAGAAACTTGAACAAGATCA 8748 Query 364394 TCGACAAGAATTATTATCCAATTCCTGAAGCC-GAGCGTTCTAATATGCGTCATCGCCCG 364452 | |||| || || || || | || || ||| || | | ||| | |||||||| || Sbjct 8747 TTGACATCAACTACTACCCCGTCCCAGAGGCCAGAAAGAGC-AATTTCCGTCATCGACCT 8689 Query 364453 ATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTC-AAGA-TGGCATTTG 364510 || | | | ||||| || || || || || | ||| || |||| || | |||||| Sbjct 8688 ATCGCTGTCGGTGTTCAAGGTCTTGCCGATGCTTTCTTG--GCTCTTCGATTACCATTTG 8631 Query 364511 ATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAA 364570 | || ||||| || || || | | ||||| ||||| || || || || Sbjct 8630 AATCACCTGAAGCCAAGCACCTCAACATTCAAATCTTCGAAACTATTTACCACGCTGCTT 8571 Query 364571 TGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCC 364630 |||| | || ||| | || || ||| | || ||||| || || || | Sbjct 8570 TGACATCGTCCGTTGAGATTGCTAAGGAGTTGGGTACCTATGAGACTTACGAAGGCTCAC 8511 Query 364631 CTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGA 364690 || | ||| |||| || | || | ||| | ||| || || || | | || ||| Sbjct 8510 CTGTCTCGAAGGGCGAACTTCAATACGATATGTGGGGAGTTACACCTACCGACCTTTGGG 8451 Query 364691 ACTGGGATACGCT--ACG--TTCCAACGTTAAGAAGCATGGTACTCGCAAC---TCCCTC 364743 ||||||||| ||| | | |||| | || | || ||| |||||| | ||| Sbjct 8450 ACTGGGATA-GCTTGAAGAAATCCA---TCAAACAACACGGTGTCCGCAACAGTTTGCTC 8395 Query 364744 GTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTC 364803 ||| || || ||||| || || || | || || ||||| |||||||||||| Sbjct 8394 GTT---GCTCCTATGCCAACAGCCAGCACCTCTCAAATTCTCGGTTTCAACGAGTGCTTT 8338 Query 364804 GAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTT 364863 ||||| | || || | || || || || || | | |||||||| | || ||| Sbjct 8337 GAACCATACACTTCTAACATCTACTCTCGTCGTGTCTTGGCTGGAGAATTCCAAGTTGTT 8278 Query 364864 AATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAAC 364923 || | || ||||||||||| |||| || | ||| |||| |||||||||| Sbjct 8277 AACCCATGGCTGCTCAAGGATCTTGTCGACATGGGATTATGGTCAGACAACATGAAGAAC 8218 Query 364924 TATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAG 364983 |||||||| | ||||||| | || |||||||| |||||| || | ||| Sbjct 8217 CGCATCATCGCTGACGGTGGTTCTATTCAAAACATTCCCAACATTCCAGCTGACATCAAG 8158 Query 364984 CCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGAT 365043 | ||||||| ||||| ||||| ||||| ||||| | || | ||||| || ||| Sbjct 8157 GCACTTTACAAGACCGTCTGGGAGATTTCTCAACGAACAATTGTTCAAATGGCCGCTGAT 8098 Query 365044 CGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCC 365103 || ||||| ||| | ||| || || | ||| | ||||| | || || Sbjct 8097 CGTGGTGCCTTTGTTGACCAGTCACAATCAATGAACATTCACATGAAAGACCCCACAATG 8038 Query 365104 GCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | |||| |||| |||||||||||| ||| ||||||| ||||| ||||| || Sbjct 8037 GGCAAGATTACTTCCATGCATTTCGCCGGTTGGAAATTGGGTCTCAAGACCGG 7985 >seq3592 Length=24835 Score = 98.7 bits (108), Expect = 3e-15 Identities = 102/129 (79%), Gaps = 6/129 (5%) Strand=Plus/Minus Query 111420 GTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATT-CAGTTGGTCTTGTCGA 111478 |||||||| ||||| || |||||||| || || ||||||||| ||| | |||| | | Sbjct 18980 GTAAAAATCTGGGACGGCAATGGATCGCGCGAATTTCTAGATAGCAGAGG--CTTGAC-A 18924 Query 111479 CAACG--AAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCA 111536 || || ||| |||||||| || ||||| || || ||||||||||| ||||||||||| Sbjct 18923 CACCGTGAAGTTGGTGATCTTGGGCCAGTCTATGGCTTTCAATGGCGACACTTTGGTGCC 18864 Query 111537 GACTACAAA 111545 || |||||| Sbjct 18863 GAATACAAA 18855 >seq41 Length=27402 Score = 91.5 bits (100), Expect = 4e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 65840 CATACTTAAACTGCACGACCATTCCTTGTGCGTTACGAATCGTTCCGTCATAATTGCACA 65899 ||||| ||||||||||| || ||| ||| || | ||| |||||||| || || Sbjct 16618 CATACACAAACTGCACGATGTCGCCAAGTGAGTTTCGGACCGTACCGTCATATTTCGCCA 16677 Query 65900 TATTATCTTCACTTGCCTTTACAAGACAACGCTGGATGTAACCACTGTTTGCAGTTTTTA 65959 | ||||||| ||||| ||||||| ||| || ||||||||| | | ||| || || | Sbjct 16678 TGACATCTTCAAGAGCCTTGACAAGACGACGTTGAATGTAACCAGTTTCTGCGGTCTTGA 16737 Query 65960 CCGCGGTATCAACGAGACCTTCACGCCCGGACATTGCAGAAAAGAAAAACTCAGTCGG 66017 | || ||||| | | ||||||||| || | ||| || ||||| || ||||| || Sbjct 16738 CTGCAGTATCGATCAAACCTTCACGACCAGCCATGGCGTGGAAGAAGAATTCAGTGGG 16795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303293315823020