Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq443 96.9 3e-15 seq1292 89.7 4e-13 >seq443 Length=6205 Score = 96.9 bits (106), Expect = 3e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 ||||| || | || || | || |||||| | |||||||||||| | ||||| Sbjct 3532 ACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCGACAACGTCAAGTCC 3473 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 ||||| ||||| || ||||| ||||| |||||||| | |||| | || || || Sbjct 3472 AAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTGATCTTCGCTGGTAAA 3413 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 ||||||||||||| | | | | ||||| || ||||| ||||||||||| || |||| Sbjct 3412 CAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAGAATCCACCCTTCAC 3353 Query 24195 TTAGTG 24200 || ||| Sbjct 3352 TTGGTG 3347 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086 || ||| |||| |||||| ||| ||| || ||||| | || || |||||| || Sbjct 3804 ATCACCCTCGAGGTCGAGTCCAGCGATACTATCGACAACGTAAAGAGCAAGATTCAGGAT 3745 Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146 || || || || || || || |||||| | |||| | || ||||| ||||| |||||| Sbjct 3744 AAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCGGGCAAACAACTTGAAGAT 3685 Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 | | | | | | ||||| || ||||||||||| || ||||| Sbjct 3684 GGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTAC 3644 >seq1292 Length=3705 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || ||| | || ||| |||| || || || Sbjct 2170 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 2111 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | ||||| ||||| ||||| || || || || || ||||| Sbjct 2110 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 2051 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | ||||| | || |||||||||||||||||||| | | | | ||| || ||| Sbjct 2050 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 1991 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| ||||| || |||| || || Sbjct 1990 ATCCAAAAGGAATCCACTCTTCACTTGGT 1962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429917084159550