Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq443 96.9 3e-15
seq1292 89.7 4e-13
>seq443
Length=6205
Score = 96.9 bits (106), Expect = 3e-15
Identities = 133/186 (72%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074
||||| || | || || | || |||||| | |||||||||||| | |||||
Sbjct 3532 ACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCGACAACGTCAAGTCC 3473
Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134
||||| ||||| || ||||| ||||| |||||||| | |||| | || || ||
Sbjct 3472 AAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTGATCTTCGCTGGTAAA 3413
Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194
||||||||||||| | | | | ||||| || ||||| ||||||||||| || ||||
Sbjct 3412 CAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAGAATCCACCCTTCAC 3353
Query 24195 TTAGTG 24200
|| |||
Sbjct 3352 TTGGTG 3347
Score = 87.8 bits (96), Expect = 2e-12
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086
|| ||| |||| |||||| ||| ||| || ||||| | || || |||||| ||
Sbjct 3804 ATCACCCTCGAGGTCGAGTCCAGCGATACTATCGACAACGTAAAGAGCAAGATTCAGGAT 3745
Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146
|| || || || || || || |||||| | |||| | || ||||| ||||| ||||||
Sbjct 3744 AAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCGGGCAAACAACTTGAAGAT 3685
Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187
| | | | | | ||||| || ||||||||||| || |||||
Sbjct 3684 GGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTAC 3644
>seq1292
Length=3705
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || ||||| | || || ||| | || ||| |||| || || ||
Sbjct 2170 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 2111
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| |||||||| | ||||| ||||| ||||| || || || || || |||||
Sbjct 2110 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 2051
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|| | ||||| | || |||||||||||||||||||| | | | | ||| || |||
Sbjct 2050 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 1991
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199
|| ||||| ||||| || |||| || ||
Sbjct 1990 ATCCAAAAGGAATCCACTCTTCACTTGGT 1962
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429917084159550
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |