Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq1292 134 1e-26
seq443 114 1e-20
>seq1292
Length=3705
Score = 134 bits (148), Expect = 1e-26
Identities = 169/232 (73%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||| || | ||| || || || || | || || |||||||| |||||||| |||
Sbjct 1943 GCCACCACGTAGACGAAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGA 2002
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| |||||| || || || |||||||| ||| |||| | ||| ||||| || || ||
Sbjct 2003 AAGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGG 2062
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186
|||||| || ||||| ||| || ||||| | || | ||||| | ||| || |
Sbjct 2063 GATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAAC 2122
Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238
|||| ||| | ||||||||| || || ||||| ||||| ||||||||||||
Sbjct 2123 CTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCATGACT 2174
>seq443
Length=6205
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| || || | ||| || || | ||| | || |||||||||||||||||||| ||||||
Sbjct 3614 CCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTC 3673
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || || || || || ||||| ||| |||| || ||||| |||||||| ||
Sbjct 3674 AAGGTACGGCCATCTTCAAGTTGTTTGCCCGCGAAGATCAAGCGCTGTTGGTCCGGGGGA 3733
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
||||| || || || || || ||| | | || | ||||||| |||||||||
Sbjct 3734 ATTCCCTCCTTATCCTGAATCTTGCTCTTTACGTTGTCGATAGTATCGCTGGACTCGACC 3793
Query 131188 TCGACGGTAACGGTTTTACCGGT 131210
|||| ||| | ||| || |||||
Sbjct 3794 TCGAGGGTGATGGTCTTGCCGGT 3816
Score = 87.8 bits (96), Expect = 2e-12
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| || || | ||| ||||| || || | || |||||| ||||||||||||||
Sbjct 2874 CCGCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAA 2933
Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
| || | || | ||||| | |||||| || || |||| || ||||| |||||||| ||
Sbjct 2934 AGAGTTCTGCCA-TCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGG 2992
Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185
|| || || ||||| ||| | | || ||||| | || | ||||| | || || |
Sbjct 2993 AATACCCTCCTTGTC-TTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCA 3051
Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | |||| ||| || ||||| | ||| || ||||| ||||||||
Sbjct 3052 CTTCCAATGTAATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 3100
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471991500422400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |