Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq60 255 7e-63 seq3070 107 2e-18 >seq60 Length=14677 Score = 255 bits (282), Expect = 7e-63 Identities = 1139/1776 (64%), Gaps = 35/1776 (2%) Strand=Plus/Plus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 ||||| ||||| || |||||||||| | ||||| || ||||||||||| || || ||| Sbjct 7937 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 7996 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || | |||| ||| |||||||| || | ||| | || ||| || Sbjct 7997 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 8056 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 || || ||||| ||||| || || | ||||| || | || || ||||||| | | Sbjct 8057 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 8116 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089 || || ||| | ||| ||||| | || || |||| | ||| || || |||||| | Sbjct 8117 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 8176 Query 62090 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146 || | | || ||||| || ||||| || || || || | ||||| || | || | Sbjct 8177 TTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCTGAC 8236 Query 62147 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62206 |||||| | ||| | | | | || || || ||||| ||||| ||||||||| Sbjct 8237 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 8296 Query 62207 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 62266 | ||| || | |||| ||| || ||| || || ||||| | |||| || || Sbjct 8297 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 8356 Query 62267 AAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62325 | |||||||| || || || | || |||||||| || || | ||||| || | | ||| Sbjct 8357 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 8415 Query 62326 GTATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 62384 || | | |||| || | || || | ||||| | |||||| || | ||| ||| Sbjct 8416 GTGTTGTTTGATGG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 8474 Query 62385 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 62444 ||| || || || | | || ||| | || || || || | Sbjct 8475 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAAGTCTCATAGG 8534 Query 62445 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCC-TCT-AATGCACCGTAATAAATGGTTTC 62502 || || || ||| | || |||| | | | || ||| ||| ||||| ||||| Sbjct 8535 TACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 8592 Query 62503 GAAGATCTTCTTATTTAGAT-CTTGCGCTTCCAGGCTAT-CAAATGGATAATTTAAGAG- 62559 |||||| | | || || | |||| ||||| ||| || ||||||| |||| ||||| Sbjct 8593 GAAGATTTGAATGTTGAGGTGCTTG-GCTTC-AGGTGATTCAAATGG-TAATCGAAGAGC 8649 Query 62560 -AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62618 || ||| || || || | ||||||||||| | | ||||||||| ||| | ||| | Sbjct 8650 CAAGAAA-GCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-G 8707 Query 62619 AGATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62677 |||| | | ||||| | || || || || || || || || || || | |||||| Sbjct 8708 CTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTG 8767 Query 62678 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT-TAC 62733 |||| |||| || || | || || | ||||| | || | ||| || | | Sbjct 8768 ACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCC 8827 Query 62734 AAACATGTTC--AATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62791 | | ||||| | |||| || |||| ||||| || || |||| | | | Sbjct 8828 ACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAG 8887 Query 62792 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 62851 |||| | || || ||||| | ||| | ||||| || | || | ||| || Sbjct 8888 TATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTG 8947 Query 62852 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 62911 ||||| ||||| || |||||||| ||||| ||||||||| | || || || | |||| Sbjct 8948 CTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGCC 9007 Query 62912 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTT 62971 || | ||| | | ||| | | | || || || | || | |||| || | Sbjct 9008 TCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTC--TTGCGACCTCTACCTTCCT 9065 Query 62972 TCGTATAG-TGT-ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGAC 63029 || ||| | | ||| | ||| |||||||| || | |||| ||| ||||||| Sbjct 9066 TCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGAC 9125 Query 63030 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63089 |||||| || ||||| | | ||| || ||| | | || || ||||| ||||||| Sbjct 9126 ATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGAT 9185 Query 63090 CAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63148 | |||||||| | || ||| || ||||| | || | ||| || || || ||| Sbjct 9186 CCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCATGGTTC 9244 Query 63149 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63208 ||| ||| || |||||| | | || ||| | ||||| || || | || | || | Sbjct 9245 TTTCGAAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAAT 9304 Query 63209 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63268 | ||||| || |||||||| || || || | ||||||||| ||||| || |||||| Sbjct 9305 GCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAACTCGT 9364 Query 63269 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCA 63328 | ||| || | || || ||||| |||| ||||| || | ||| || ||| ||||| Sbjct 9365 AGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCA 9424 Query 63329 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63388 || || | ||| ||||| || || || || |||||||||| | || ||| Sbjct 9425 CGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTC 9484 Query 63389 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 || | |||||||| || || || ||||| || ||| |||| | || || || || Sbjct 9485 TTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGCATGAT 9544 Query 63449 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCAT 63508 || | || | || || || || | ||||| || ||||| || || || Sbjct 9545 GAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGTAT 9604 Query 63509 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCC 63567 || | || | || ||||| |||||||| || || ||||| || | ||||| || Sbjct 9605 TTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGAATACC 9663 Query 63568 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63603 || || |||||||| | ||| || || || | ||| Sbjct 9664 AACGGCAACACGCATGATCATTTGTTGTGGACGTTC 9699 >seq3070 Length=35956 Score = 107 bits (118), Expect = 2e-18 Identities = 228/336 (68%), Gaps = 7/336 (2%) Strand=Plus/Plus Query 32881 TTGTCTCTATAGCATTAAAGAGATA-GtttttttCATTACTATCTTTAACATATGTATCA 32939 ||||||| || ||||| |||||||| ||| || | | || |||| |||||||| Sbjct 29087 TTGTCTCAATTGCATTGAAGAGATATGTTCGTTGGGCTTGT-TCCTTAATGTATGTATCG 29145 Query 32940 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAG 32999 || | ||| || |||| || || || || || || ||||| || ||||||||| Sbjct 29146 ATGAGGAGAGAGTATGTTTCGGAGTGGATATTCTCCATCATAATTTGGAAACCGTAGAAG 29205 Query 33000 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACT 33059 || | |||||||| || || ||||| || || || || | | || || || ||| Sbjct 29206 CAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGGTTCTCGTTGACT 29265 Query 33060 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC---- 33115 |||||||| ||||| || || || | || || || ||||| || || Sbjct 29266 ATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAGCGCTCATCATCA 29325 Query 33116 TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCA 33175 | | ||| | ||||||||||| | | || || || | || | ||||| ||||||| Sbjct 29326 TTGAGTTTG-TTATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCTTCTGCTGTCCA 29384 Query 33176 AAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 || |||||||| |||||||| ||||| | |||||| Sbjct 29385 GAAAGATGCCTCGGCCTTTTTGTACATTTGCCAGAT 29420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633603407356000