Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq60 255 7e-63
seq3070 107 2e-18
>seq60
Length=14677
Score = 255 bits (282), Expect = 7e-63
Identities = 1139/1776 (64%), Gaps = 35/1776 (2%)
Strand=Plus/Plus
Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909
||||| ||||| || |||||||||| | ||||| || ||||||||||| || || |||
Sbjct 7937 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 7996
Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969
|| | |||| ||| |||||||| || | ||| | || ||| ||
Sbjct 7997 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 8056
Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029
|| || ||||| ||||| || || | ||||| || | || || ||||||| | |
Sbjct 8057 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 8116
Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089
|| || ||| | ||| ||||| | || || |||| | ||| || || |||||| |
Sbjct 8117 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 8176
Query 62090 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146
|| | | || ||||| || ||||| || || || || | ||||| || | || |
Sbjct 8177 TTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCTGAC 8236
Query 62147 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62206
|||||| | ||| | | | | || || || ||||| ||||| |||||||||
Sbjct 8237 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 8296
Query 62207 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 62266
| ||| || | |||| ||| || ||| || || ||||| | |||| || ||
Sbjct 8297 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 8356
Query 62267 AAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62325
| |||||||| || || || | || |||||||| || || | ||||| || | | |||
Sbjct 8357 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 8415
Query 62326 GTATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 62384
|| | | |||| || | || || | ||||| | |||||| || | ||| |||
Sbjct 8416 GTGTTGTTTGATGG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 8474
Query 62385 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 62444
||| || || || | | || ||| | || || || || |
Sbjct 8475 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAAGTCTCATAGG 8534
Query 62445 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCC-TCT-AATGCACCGTAATAAATGGTTTC 62502
|| || || ||| | || |||| | | | || ||| ||| ||||| |||||
Sbjct 8535 TACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 8592
Query 62503 GAAGATCTTCTTATTTAGAT-CTTGCGCTTCCAGGCTAT-CAAATGGATAATTTAAGAG- 62559
|||||| | | || || | |||| ||||| ||| || ||||||| |||| |||||
Sbjct 8593 GAAGATTTGAATGTTGAGGTGCTTG-GCTTC-AGGTGATTCAAATGG-TAATCGAAGAGC 8649
Query 62560 -AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62618
|| ||| || || || | ||||||||||| | | ||||||||| ||| | ||| |
Sbjct 8650 CAAGAAA-GCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-G 8707
Query 62619 AGATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62677
|||| | | ||||| | || || || || || || || || || || | ||||||
Sbjct 8708 CTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTG 8767
Query 62678 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT-TAC 62733
|||| |||| || || | || || | ||||| | || | ||| || | |
Sbjct 8768 ACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCC 8827
Query 62734 AAACATGTTC--AATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62791
| | ||||| | |||| || |||| ||||| || || |||| | | |
Sbjct 8828 ACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAG 8887
Query 62792 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 62851
|||| | || || ||||| | ||| | ||||| || | || | ||| ||
Sbjct 8888 TATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTG 8947
Query 62852 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 62911
||||| ||||| || |||||||| ||||| ||||||||| | || || || | ||||
Sbjct 8948 CTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGCC 9007
Query 62912 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTT 62971
|| | ||| | | ||| | | | || || || | || | |||| || |
Sbjct 9008 TCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTC--TTGCGACCTCTACCTTCCT 9065
Query 62972 TCGTATAG-TGT-ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGAC 63029
|| ||| | | ||| | ||| |||||||| || | |||| ||| |||||||
Sbjct 9066 TCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGAC 9125
Query 63030 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63089
|||||| || ||||| | | ||| || ||| | | || || ||||| |||||||
Sbjct 9126 ATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGAT 9185
Query 63090 CAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63148
| |||||||| | || ||| || ||||| | || | ||| || || || |||
Sbjct 9186 CCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCATGGTTC 9244
Query 63149 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63208
||| ||| || |||||| | | || ||| | ||||| || || | || | || |
Sbjct 9245 TTTCGAAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAAT 9304
Query 63209 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63268
| ||||| || |||||||| || || || | ||||||||| ||||| || ||||||
Sbjct 9305 GCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAACTCGT 9364
Query 63269 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCA 63328
| ||| || | || || ||||| |||| ||||| || | ||| || ||| |||||
Sbjct 9365 AGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCA 9424
Query 63329 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63388
|| || | ||| ||||| || || || || |||||||||| | || |||
Sbjct 9425 CGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTC 9484
Query 63389 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448
|| | |||||||| || || || ||||| || ||| |||| | || || || ||
Sbjct 9485 TTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGCATGAT 9544
Query 63449 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCAT 63508
|| | || | || || || || | ||||| || ||||| || || ||
Sbjct 9545 GAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGTAT 9604
Query 63509 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCC 63567
|| | || | || ||||| |||||||| || || ||||| || | ||||| ||
Sbjct 9605 TTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGAATACC 9663
Query 63568 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63603
|| || |||||||| | ||| || || || | |||
Sbjct 9664 AACGGCAACACGCATGATCATTTGTTGTGGACGTTC 9699
>seq3070
Length=35956
Score = 107 bits (118), Expect = 2e-18
Identities = 228/336 (68%), Gaps = 7/336 (2%)
Strand=Plus/Plus
Query 32881 TTGTCTCTATAGCATTAAAGAGATA-GtttttttCATTACTATCTTTAACATATGTATCA 32939
||||||| || ||||| |||||||| ||| || | | || |||| ||||||||
Sbjct 29087 TTGTCTCAATTGCATTGAAGAGATATGTTCGTTGGGCTTGT-TCCTTAATGTATGTATCG 29145
Query 32940 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAG 32999
|| | ||| || |||| || || || || || || ||||| || |||||||||
Sbjct 29146 ATGAGGAGAGAGTATGTTTCGGAGTGGATATTCTCCATCATAATTTGGAAACCGTAGAAG 29205
Query 33000 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACT 33059
|| | |||||||| || || ||||| || || || || | | || || || |||
Sbjct 29206 CAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGGTTCTCGTTGACT 29265
Query 33060 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC---- 33115
|||||||| ||||| || || || | || || || ||||| || ||
Sbjct 29266 ATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAGCGCTCATCATCA 29325
Query 33116 TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCA 33175
| | ||| | ||||||||||| | | || || || | || | ||||| |||||||
Sbjct 29326 TTGAGTTTG-TTATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCTTCTGCTGTCCA 29384
Query 33176 AAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211
|| |||||||| |||||||| ||||| | ||||||
Sbjct 29385 GAAAGATGCCTCGGCCTTTTTGTACATTTGCCAGAT 29420
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633603407356000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |