Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq1292 140 3e-28
seq443 132 4e-26
seq60 132 4e-26
seq839 89.7 4e-13
>seq1292
Length=3705
Score = 140 bits (154), Expect = 3e-28
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || ||||| | || |||||||| |||| || || || ||| || |
Sbjct 2170 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 2111
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| || |||| || || || ||||||||||| || ||||| |||||
Sbjct 2110 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 2051
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|||||||| || || |||||||| || | || ||| |||||| | ||||| ||||||
Sbjct 2050 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 1991
Query 22399 ATTCAAAAAGAATCCAC 22415
|| ||||| ||||||||
Sbjct 1990 ATCCAAAAGGAATCCAC 1974
>seq443
Length=6205
Score = 132 bits (146), Expect = 4e-26
Identities = 144/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || ||||| ||||| || || | || | ||||||||| | |
Sbjct 3100 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATTACATTGGAAGTGGAATCGTCA 3041
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| || |||| ||| |||||||||||||||||||||||||| || |||
Sbjct 3040 GATACCATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAGGGTATTCCACCGGACCAA 2981
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || ||||| || || ||||| |||||| | | || | || |||||||||
Sbjct 2980 CAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTACAAC 2921
Query 22399 ATTCAAAAAGA 22409
||||| || ||
Sbjct 2920 ATTCAGAAGGA 2910
Score = 125 bits (138), Expect = 6e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || || | ||||| || || |||| | || || || | |
Sbjct 3328 ATGCAAATCTTCGTGAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCA 3269
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| | | ||| ||| |||||||| ||||||||||| ||||| || ||
Sbjct 3268 GATACCATCGACAACGTGAAATCAAAGATTCAAGATAAGGAGGGTATCCCACCGGACCAG 3209
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||||||||||| ||||| || || || | |||||| |||||| | || || ||||||
Sbjct 3208 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAAC 3149
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427
|| || ||||| ||||| | ||||| ||
Sbjct 3148 ATCCAGAAAGAGTCCACACTGCATTTGGT 3120
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22231 GTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGAC 22290
|| || ||| | || || || || |||||||||| || || | |||| ||| | |||
Sbjct 3544 GTCAAGACTCTTACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCGAC 3485
Query 22291 GATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATA 22350
| |||| || || || ||||||||||| ||||| || |||||||||||| | ||
Sbjct 3484 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTGATC 3425
Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410
|| || || ||||| | || ||| |||||| | ||| |||||||| |||||||||
Sbjct 3424 TTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAGAA 3365
Query 22411 TCCACCATACATTTAGT 22427
|||||| | || || ||
Sbjct 3364 TCCACCCTTCACTTGGT 3348
Score = 82.4 bits (90), Expect = 6e-11
Identities = 122/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||| || || || || ||| |||||| | ||| | | ||
Sbjct 3816 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACTATCGACAACGTAAAGAGC 3757
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| || |||||||| ||||| || || ||||| || | || || || ||||||
Sbjct 3756 AAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCGGGCAAA 3697
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415
|| | || ||| ||| ||| | ||| |||||||||||||| || || ||
Sbjct 3696 CAACTTGAAGATGGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTAC 3644
>seq60
Length=14677
Score = 132 bits (146), Expect = 4e-26
Identities = 579/899 (64%), Gaps = 33/899 (4%)
Strand=Plus/Plus
Query 129511 TCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCTATTGGATTTTTGTGCC 129570
||||| | |||||||| ||| ||| |||| |||||||| |||| ||| |||
Sbjct 8660 TCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGGCC 8719
Query 129571 GACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATTCTTGACCACAATTTTC 129630
| ||| |||||||||||||| || || ||||| || || |||| || | ||
Sbjct 8720 TCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGACAACGACTTGA 8779
Query 129631 GTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACATCGATGTCGACAAATTGATTG 129690
|| || | | | | ||| |||| ||| || ||| ||||| |||||| |
Sbjct 8780 GTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCACAAATGTTGGG 8839
Query 129691 ACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATT 129750
| | ||| || ||||| || ||| || ||| | | | || ||| |||||||||
Sbjct 8840 AGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTATTCGACAATT 8899
Query 129751 TCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTG 129810
|| | ||||||||| | ||||||||| | | |||||| || || ||| |||||
Sbjct 8900 TCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCTTCTTGTTG 8959
Query 129811 CAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTC 129870
|| ||||| ||||| | |||| | || | || || ||| ||| | |||| |||||
Sbjct 8960 CATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGCCTCGAGAATGG-- 9017
Query 129871 CTGAAC--AAG-TCTCGAGCCTTGATCTGTCTTAC-AAATTTGCCACATTTCTCGTATGC 129926
| || ||| | | | || ||||| ||||| | | | | || ||||| ||
Sbjct 9018 -AGTACCAAAGCTTTTGGGCTTTGAT-GGTCTTGCGACCTCTACCTTCCTTCTCATAACT 9075
Query 129927 CACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGTCGAGCAAC---GGCGATTCACG 129983
| |||| || |||||| || ||| | ||| || |||| || |||||
Sbjct 9076 CTCATAGAGAGCTTCAAACTCGTCGCCATATAC---ATCAGCCAACCCAGGACATTCATT 9132
Query 129984 CGGACACATCAAACTCCACATTC-CATCCGCTTCGACTCGTTTCATAAACAAATCGGGTA 130042
|| ||||| | |||| || | | | | ||| || || ||||| || | ||| || |
Sbjct 9133 GGGGCACATTAGTGTCCA-ATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAA 9191
Query 130043 CCCACAGGGCGTACAACAAATC----TCGCGCTTTTCTATCCTCGGCACCCATGTTACGT 130098
||||| ||| || || | ||| |||| |||| |||| | ||||| | | |
Sbjct 9192 TCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCT-TCCTTG----CCATGGTTC-T 9245
Query 130099 TTC--AGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTG 130156
||| || || ||||| ||| ||| || |||||||| || |||| ||| | ||| | ||
Sbjct 9246 TTCGAAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATG 9305
Query 130157 CGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCA 130213
| || || ||| || |||||||| |||| | | | |||||| | ||||| |
Sbjct 9306 CACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAACTCGTA 9365
Query 130214 ACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCC 130273
||| | | | ||||||| | ||||| || | | ||| | ||| || |
Sbjct 9366 GCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCAC 9425
Query 130274 GAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCA-ATCG 130332
| | | |||| | | ||||| || || || || ||| || |||| || || ||
Sbjct 9426 GGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCT 9485
Query 130333 CGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGA 130391
| || || |||||||| ||| | |||||||| || || || | | |||||| || ||
Sbjct 9486 TG-AGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGCATGA 9543
>seq839
Length=32500
Score = 89.7 bits (98), Expect = 4e-13
Identities = 118/164 (72%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || || |||| ||||| || || || ||||||| | ||| || ||||
Sbjct 17702 ACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACTATTGACAATGTCAAGTCC 17643
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| ||||| || || ||||||||| | || || ||||| ||
Sbjct 17642 AAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAACGTTTGATCTTCGCCGGAAAG 17583
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
|| | ||||| || ||| | || || |||||||| |||||
Sbjct 17582 CAACTCGAGGACGGACGAACCCTTTCAGACTACAACATCCAAAA 17539
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419709533279650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |