Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq383 93.3 9e-14 >seq383 Length=32647 Score = 93.3 bits (102), Expect = 9e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||| |||| | || ||||||| |||||||| || || Sbjct 19233 GGTGAGGATCTTTGCAACTGTACTTTCAACTTGGCCTATGGTGCTAAGATTCTTCTCAAT 19174 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | |||| ||||||||||| | || |||||||| ||| || || || | Sbjct 19173 CAAACTCACCTCCGTCTCAAGCGTGGCCAACGATATGGTCTTTGCGGACCTAACGGTTCC 19114 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| |||||| ||||| ||||| |||| || | ||||| || || || Sbjct 19113 GGAAAGTCCACTCTTATGCGTGCCATCAACAACGAACAAGTCGAAGGTTTCCCCAAGAAG 19054 Query 279525 TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 |||||| | ||| |||| || |||||||| ||||||| Sbjct 19053 AGTGAGGTTAAGACTGTGTTCGTTGAGCACGATCTCGACTC 19013 Score = 87.8 bits (96), Expect = 4e-12 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | ||| ||||| | ||||| |||||||||| || ||||||||||| | Sbjct 17861 CCAACTTTGGTTTGGACGCTGAGTTGGTTTCTCACTCTCGTATGTTGGGTCTTTCTGGTG 17802 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 | ||| ||||| |||| ||| || |||| |||||||| ||||| ||||||| Sbjct 17801 GACAGCGTGTCAAGGTTGTTCTCGCTGCTTGCTC-GTGGCAACGTCCTCATTTGATCGTC 17743 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 || ||||| ||||||||||| ||||||| || Sbjct 17742 CTTGACGAACCTACCAACTACTTGGACCGTGA 17711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027789259336010