Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3070 118 2e-21 >seq3070 Length=35956 Score = 118 bits (130), Expect = 2e-21 Identities = 179/252 (71%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 243503 TCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGC 243562 |||||||||| || || || | |||| | |||||| | ||| ||| |||| || | Sbjct 28757 TCATCACAGAGGCTGTCGAGATCGAACAAGAATTCTTGACCGAGGCTCTTCCTTGTGCAC 28698 Query 243563 TTATTGGCATGAACTCTGAACTC-ATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || ||||||||||| | ||||| ||| || |||||||| ||||| ||||| || | Sbjct 28697 TTCTTGGCATGAACGC-GAACTTGATGAAGCAATACATCGAGTTCGTCGCCGATCGTCTC 28639 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 | | || |||||| | ||||| |||||||| || ||||| || | ||| |||||| Sbjct 28638 CTAGTTGCTCTTGGTAACGAGAAGGTGTACAAGTCTGCCAACCCATTCGACTTCATGGAG 28579 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGC 243741 ||| || || ||| || || ||||||||||| ||| | || |||| || || Sbjct 28578 AACATCTCCCTAGCAGGCAAGACAAACTTCTTCGAGAAGAGAGTTGGTGACTACCAGAAG 28519 Query 243742 CCTGGTGTGATG 243753 ||||||| ||| Sbjct 28518 GCTGGTGTTATG 28507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102828988353500