Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq60 152 6e-32
seq3070 100 3e-16
>seq60
Length=14677
Score = 152 bits (168), Expect = 6e-32
Identities = 874/1381 (63%), Gaps = 36/1381 (3%)
Strand=Plus/Plus
Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624
|||||||||| ||| | |||| | | |||||||||||||| || |||||||| |
Sbjct 7938 TGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGAC 7997
Query 113625 CCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 113684
|| ||||| | | |||||| || | | |||| | ||| || || ||||
Sbjct 7998 CCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATGT 8057
Query 113685 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCA 113744
| |||||| ||| || || || | ||| |||||||| || ||||| | || ||
Sbjct 8058 GAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAA-CA 8116
Query 113745 CATCCTTCATCTTGA--TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGAT 113802
|| ||| | || | ||||| || || |||| || ||| || ||| |||| ||
Sbjct 8117 -ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAAT 8175
Query 113803 ATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGA 113862
| || ||||| || || ||||| | || ||| | | |||||| | | |||
Sbjct 8176 GTTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCTGA 8235
Query 113863 CCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAACTCA 113920
||| | || || | ||||||| | || ||| | | ||||| || ||
Sbjct 8236 CCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGT--TAACAACTTGGAATTCT 8293
Query 113921 CCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTT 113979
|| || | | || | ||| ||||| || | |||||||| ||||||||||| |||
Sbjct 8294 CCAGCCAAGACACGACG-AGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAA 8352
Query 113980 ACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAG 114039
||| | ||||| | |||| |||||| ||||| || || | ||| | ||||| ||||
Sbjct 8353 ACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGAC 8412
Query 114040 ACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA---GTTG--AGCTTTGTC 114094
||| | || | ||| || ||| | | |||||||| | || | || | | |
Sbjct 8413 ACCGTGTTGTTTGATGGATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAAC 8472
Query 114095 TCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTC 114154
||||| ||||||| | || || || | ||| | || || || || | |||
Sbjct 8473 TCCCC-----ACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAAGTC 8527
Query 114155 TCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATT 114214
|| || | ||| ||| || | || | || | || ||||| || ||
Sbjct 8528 TCATAGGTACCCAACTCCTTAGCAATCTCAACGGACGATGTCAAAGCAGCGTGGTAAATA 8587
Query 114215 GTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGC-A 114273
|| || || || || || | |||||| || || ||||| | | ||| |
Sbjct 8588 GTTTCGAAGATTTGAATGTTGAGGTGCTTGGCTTCAGGTGATTCAAATGGTAATCGAAGA 8647
Query 114274 CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATT 114333
|| ||| |||| || |||||||| ||||||| | || || ||||| | | |||
Sbjct 8648 GCCAAGAAAG-CATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT 8706
Query 114334 AGACTTTCGAGCGGTCTCC-ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTT 114392
||||| || ||| ||||| || | || | || || | | | || | |||
Sbjct 8707 GCTCTTTCTGGCC-TCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTC 8765
Query 114393 TGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC-TTCA 114451
|| || || | || | || |||||||||| | |||| || | | ||| ||||
Sbjct 8766 TGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCC---CTCATTCA 8822
Query 114452 TTG--ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTAT 114509
| ||| | | || || || || || |||| ||||| || | |||||
Sbjct 8823 TGTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGG 8882
Query 114510 CAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTT 114569
||| ||| || | |||||| || |||||||| || || ||||||||| | ||||||||
Sbjct 8883 CAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTT 8942
Query 114570 GATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTT 114629
| || ||| |||| || |||||||||||||||||| |||| | || ||||| ||||
Sbjct 8943 GGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTT 9002
Query 114630 GGGACTTGAGAATAGCCTTCCAGACATCGGCGGCTGGCACAGTGGCGTTG---GCTCGCC 114686
| | || |||||| | | ||| | | |||| | ||| ||| ||| |
Sbjct 9003 GAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGA---TGGTCTTGCGACCTCTAC 9059
Query 114687 CCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCC 114746
| |||| ||| || | ||||| ||||||||||| || || | || | | ||
Sbjct 9060 CTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACC 9119
Query 114747 CTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGA 114806
| || | || ||||| | || | ||| | | || ||||||||||||||||
Sbjct 9120 CAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGA 9179
Query 114807 AGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCT 114866
|||| || || ||||| | || |||| ||||| || ||| ||||||| | || |
Sbjct 9180 AGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCAT 9239
Query 114867 GATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCG 114926
| || || | |||| || || | | ||| |||||||| || || || || || |
Sbjct 9240 GGTTCTTTCGAAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTG 9299
Query 114927 C 114927
|
Sbjct 9300 C 9300
>seq3070
Length=35956
Score = 100 bits (110), Expect = 3e-16
Identities = 111/148 (75%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118
|||||||| || |||||||||||||| ||||| ||||| || || | ||| | ||
Sbjct 28826 TGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACCAGCCATCAAGCCA 28885
Query 126119 CGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACAC 126178
|||||||| | |||||| || | | ||||| || ||||||||| ||||| |||
Sbjct 28886 CGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGATGCCCTCAACAGCA 28945
Query 126179 GCGAACGCAAAGAGACGCTCAGCAAAGG 126206
|| || |||| ||||||| ||||||||
Sbjct 28946 GCAAAAGCAACCAGACGCTGAGCAAAGG 28973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597326644418800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |