Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq60 152 6e-32 seq3070 100 3e-16 >seq60 Length=14677 Score = 152 bits (168), Expect = 6e-32 Identities = 874/1381 (63%), Gaps = 36/1381 (3%) Strand=Plus/Plus Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624 |||||||||| ||| | |||| | | |||||||||||||| || |||||||| | Sbjct 7938 TGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGAC 7997 Query 113625 CCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 113684 || ||||| | | |||||| || | | |||| | ||| || || |||| Sbjct 7998 CCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATGT 8057 Query 113685 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCA 113744 | |||||| ||| || || || | ||| |||||||| || ||||| | || || Sbjct 8058 GAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAA-CA 8116 Query 113745 CATCCTTCATCTTGA--TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGAT 113802 || ||| | || | ||||| || || |||| || ||| || ||| |||| || Sbjct 8117 -ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAAT 8175 Query 113803 ATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGA 113862 | || ||||| || || ||||| | || ||| | | |||||| | | ||| Sbjct 8176 GTTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCTGA 8235 Query 113863 CCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAACTCA 113920 ||| | || || | ||||||| | || ||| | | ||||| || || Sbjct 8236 CCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGT--TAACAACTTGGAATTCT 8293 Query 113921 CCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTT 113979 || || | | || | ||| ||||| || | |||||||| ||||||||||| ||| Sbjct 8294 CCAGCCAAGACACGACG-AGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAA 8352 Query 113980 ACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAG 114039 ||| | ||||| | |||| |||||| ||||| || || | ||| | ||||| |||| Sbjct 8353 ACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGAC 8412 Query 114040 ACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA---GTTG--AGCTTTGTC 114094 ||| | || | ||| || ||| | | |||||||| | || | || | | | Sbjct 8413 ACCGTGTTGTTTGATGGATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAAC 8472 Query 114095 TCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTC 114154 ||||| ||||||| | || || || | ||| | || || || || | ||| Sbjct 8473 TCCCC-----ACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAAGTC 8527 Query 114155 TCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATT 114214 || || | ||| ||| || | || | || | || ||||| || || Sbjct 8528 TCATAGGTACCCAACTCCTTAGCAATCTCAACGGACGATGTCAAAGCAGCGTGGTAAATA 8587 Query 114215 GTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGC-A 114273 || || || || || || | |||||| || || ||||| | | ||| | Sbjct 8588 GTTTCGAAGATTTGAATGTTGAGGTGCTTGGCTTCAGGTGATTCAAATGGTAATCGAAGA 8647 Query 114274 CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATT 114333 || ||| |||| || |||||||| ||||||| | || || ||||| | | ||| Sbjct 8648 GCCAAGAAAG-CATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT 8706 Query 114334 AGACTTTCGAGCGGTCTCC-ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTT 114392 ||||| || ||| ||||| || | || | || || | | | || | ||| Sbjct 8707 GCTCTTTCTGGCC-TCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTC 8765 Query 114393 TGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC-TTCA 114451 || || || | || | || |||||||||| | |||| || | | ||| |||| Sbjct 8766 TGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCC---CTCATTCA 8822 Query 114452 TTG--ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTAT 114509 | ||| | | || || || || || |||| ||||| || | ||||| Sbjct 8823 TGTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGG 8882 Query 114510 CAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTT 114569 ||| ||| || | |||||| || |||||||| || || ||||||||| | |||||||| Sbjct 8883 CAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTT 8942 Query 114570 GATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTT 114629 | || ||| |||| || |||||||||||||||||| |||| | || ||||| |||| Sbjct 8943 GGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTT 9002 Query 114630 GGGACTTGAGAATAGCCTTCCAGACATCGGCGGCTGGCACAGTGGCGTTG---GCTCGCC 114686 | | || |||||| | | ||| | | |||| | ||| ||| ||| | Sbjct 9003 GAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGA---TGGTCTTGCGACCTCTAC 9059 Query 114687 CCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCC 114746 | |||| ||| || | ||||| ||||||||||| || || | || | | || Sbjct 9060 CTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACC 9119 Query 114747 CTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGA 114806 | || | || ||||| | || | ||| | | || |||||||||||||||| Sbjct 9120 CAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGA 9179 Query 114807 AGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCT 114866 |||| || || ||||| | || |||| ||||| || ||| ||||||| | || | Sbjct 9180 AGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCAT 9239 Query 114867 GATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCG 114926 | || || | |||| || || | | ||| |||||||| || || || || || | Sbjct 9240 GGTTCTTTCGAAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTG 9299 Query 114927 C 114927 | Sbjct 9300 C 9300 >seq3070 Length=35956 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118 |||||||| || |||||||||||||| ||||| ||||| || || | ||| | || Sbjct 28826 TGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACCAGCCATCAAGCCA 28885 Query 126119 CGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACAC 126178 |||||||| | |||||| || | | ||||| || ||||||||| ||||| ||| Sbjct 28886 CGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGATGCCCTCAACAGCA 28945 Query 126179 GCGAACGCAAAGAGACGCTCAGCAAAGG 126206 || || |||| ||||||| |||||||| Sbjct 28946 GCAAAAGCAACCAGACGCTGAGCAAAGG 28973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597326644418800