Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq60 165 8e-36 >seq60 Length=14677 Score = 165 bits (182), Expect = 8e-36 Identities = 279/404 (69%), Gaps = 0/404 (0%) Strand=Plus/Minus Query 93979 GGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGG 94038 || |||| || | ||||||| ||||| | ||||| ||| | || || || || || Sbjct 9504 GGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGGAGGTATTGGT 9445 Query 94039 ATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCC 94098 ||| | ||| | ||||||| ||| | |||||| ||||||||| || | |||| Sbjct 9444 CTCAACATTCACAGAATCCGTGCCACTGGTGCATACATCGCCGGTACCAACGGTAACTCC 9385 Query 94099 AACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGT 94158 |||||| |||| || ||||| || || ||||||||| | || | ||||| ||||| ||| Sbjct 9384 AACGGCATCGTACCCATGCTACGAGTTTTCAACAACACTGCTAGATACGTCGACCAAGGT 9325 Query 94159 GGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAG 94218 || | | | ||| | || || |||||||| ||||| |||||||| || || Sbjct 9324 GGAAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTGGCACGCAGATGTTTTC 9265 Query 94219 GCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTC 94278 | ||| | ||||| ||||||||||| ||||| || | | ||| | || || ||| Sbjct 9264 GAGTTCCTGGACCTTCGAAAGAACCATGGCAAGGAAGAAGTCCGCGCCCGTGATCTTTTC 9205 Query 94279 TACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGT 94338 || || | ||| | || || || || ||||| || || || || ||| | | |||| Sbjct 9204 TATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCGGATTGGACA 9145 Query 94339 CTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGG 94382 || | || |||||||||||||| || || | || || | ||| Sbjct 9144 CTAATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATATGG 9101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494700875615600