Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq443 98.7 1e-15
seq1292 86.0 6e-12
>seq443
Length=6205
Score = 98.7 bits (108), Expect = 1e-15
Identities = 131/182 (72%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| || ||||| |||||||||||||||| || || || |||||||||||||| |
Sbjct 3363 GATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCGAGTTGTTTACCAGCG 3422
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| | ||| ||||| |||||||| || || || ||||| ||| || || |
Sbjct 3423 AAGATCAAACGTTGTTGATCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 3482
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||||| |||||| ||||| | || | || || ||||| ||||| ||
Sbjct 3483 TTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTTGCCAGTAAGAGTCTTG 3542
Query 138601 AC 138602
||
Sbjct 3543 AC 3544
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || ||||| | | ||||| || || |||||||||||
Sbjct 3102 CCACCACGGAGACGAAGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGAT 3161
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||| ||||| ||||| | | |||| ||||| || |||||||| ||
Sbjct 3162 AGAGTGCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGG 3221
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565
||||| || || || ||| | |||| ||| | ||| || | ||| || | |||||| |
Sbjct 3222 ATACCCTCCTTATC-TTGAATCTTTGATTTCACGTTG-TCGATGGTATCTGACGACTCAA 3279
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | || || || || || || || || || || |||||
Sbjct 3280 CCTCCAATGTGATTGTCTTTCCGGTAAGTGTCTTCACGAAGATTTGCAT 3328
Score = 87.8 bits (96), Expect = 2e-12
Identities = 132/185 (71%), Gaps = 2/185 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||| | || | ||| | | |||||||||||||||||||||||||||
Sbjct 3614 CCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTC 3673
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| || || |||||||| || | |||| | |||||||||||||| ||
Sbjct 3674 AAGGTACGGCCATCTTCAAGTTGTTTGCCCGCGAAGATCAAGCGCTGTTGGTCCGGGGGA 3733
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || || || ||| | || | |||| | || | || ||| | ||||| ||
Sbjct 3734 ATTCCCTCCTTATC-CTGAATCTTGCTCTTTACGTTGTCGATAGTATCGCTGGACTCGAC 3792
Query 138567 CTCGA 138571
|||||
Sbjct 3793 CTCGA 3797
>seq1292
Length=3705
Score = 86.0 bits (94), Expect = 6e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| |||||||| |||||||||||| | || || || |||||||| || ||||
Sbjct 1977 GATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCG 2036
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| ||||| || || || || || || || || ||||| ||| || || | |
Sbjct 2037 AAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACA 2096
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | ||| || | || || ||||||| || | |||||||| || || |||||
Sbjct 2097 TTG-TCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTT 2155
Query 138600 TACAAAAATCTGCATGGCT 138618
|| || ||||||||| ||
Sbjct 2156 GACGAAGATCTGCATGACT 2174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496240006159200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |