Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq60 113 6e-20
seq3070 107 2e-18
>seq60
Length=14677
Score = 113 bits (124), Expect = 6e-20
Identities = 863/1379 (63%), Gaps = 32/1379 (2%)
Strand=Plus/Plus
Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585
|||||||||| ||| | |||| | | |||||||||||||| || |||||||| |
Sbjct 7938 TGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGAC 7997
Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645
|| ||||| | | |||||| || | | |||| | ||| || || ||||
Sbjct 7998 CCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATGT 8057
Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705
| |||||| ||| || || || | ||| || ||||| || ||||| | || ||
Sbjct 8058 GAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAA-CA 8116
Query 115706 CATCCTTCATCTTGA--TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGAT 115763
|| ||| | || | ||||| || || |||| || ||| || ||| |||| ||
Sbjct 8117 -ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAAT 8175
Query 115764 ATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCTTTGA 115823
| || ||||| ||||| ||||| | || ||| | | |||||| | | |||
Sbjct 8176 GTTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCTGA 8235
Query 115824 CCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACC 115883
||| | || || | ||||||| | || || ||||| || || ||
Sbjct 8236 CCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCC 8295
Query 115884 CGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 115942
|| | | || | ||| |||||||| | |||||||| ||||||||||| ||| ||
Sbjct 8296 AGCCAAGACACGACG-AGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAAC 8354
Query 115943 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGAC 116002
| | ||||| | ||| |||||| ||||| || || | ||| | |||||||||| ||
Sbjct 8355 CGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACAC 8414
Query 116003 CCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA---GTTG--AGCTTTGTCTC 116057
| | ||| || ||| | | |||||||| | || | || | | |||
Sbjct 8415 CGTGTTGTTTGATGGATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 8474
Query 116058 CCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTC 116117
||| ||||||| | || || || | || | || || || || | |||||
Sbjct 8475 CCC-----ACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAAGTCTC 8529
Query 116118 ATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGT 116177
||| | ||| ||| || | || | || | || ||||| || || ||
Sbjct 8530 ATAGGTACCCAACTCCTTAGCAATCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGT 8589
Query 116178 CTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGC-ACA 116236
|| || || || || | |||||| || || ||||| | | || |
Sbjct 8590 TTCGAAGATTTGAATGTTGAGGTGCTTGGCTTCAGGTGATTCAAATGGTAATCGAAGAGC 8649
Query 116237 AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAG 116296
|| ||| |||| || |||||||| ||||||| | || || ||||| | | |||
Sbjct 8650 CAAGAAAG-CATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTGC 8708
Query 116297 ACTTTCGAGCGGTCTCC-ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTG 116355
||||| || ||| ||||| || | || | || || | | | || | ||| ||
Sbjct 8709 TCTTTCTGGCC-TCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTG 8767
Query 116356 GTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC-TTCATT 116414
|| || | || | || |||||||||| | |||| || | | ||| |||||
Sbjct 8768 ACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCC---CTCATTCATG 8824
Query 116415 G--ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 116472
||| | | || || || || || |||| ||||| || | ||||| ||
Sbjct 8825 TCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCA 8884
Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532
| ||| || | |||||| || |||||||| || || ||||||||| | |||||||||
Sbjct 8885 GAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGG 8944
Query 116533 TTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592
|| ||| |||| || ||||||||||| ||||| |||| | || ||||| |||||
Sbjct 8945 TTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGA 9004
Query 116593 GACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTG---GCTCGCCCC 116649
| || |||||| | | ||| | | |||| | ||| ||| ||| ||
Sbjct 9005 GCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGA---TGGTCTTGCGACCTCTACCT 9061
Query 116650 TCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCT 116709
|||| ||| || | ||||| || |||||||| || || | || | | |||
Sbjct 9062 TCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCA 9121
Query 116710 GGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAG 116769
|| | || || || | || | ||| | | || ||||| ||||||||||||
Sbjct 9122 GGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAG 9181
Query 116770 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGA 116829
|| || || ||||| | || |||| ||||| || ||| ||||||| | || ||
Sbjct 9182 AGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCATGG 9241
Query 116830 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 116888
|| || | |||| || || | | ||| |||||||| || || || || || ||
Sbjct 9242 TTCTTTCGAAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGC 9300
>seq3070
Length=35956
Score = 107 bits (118), Expect = 2e-18
Identities = 300/453 (66%), Gaps = 8/453 (2%)
Strand=Plus/Plus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
|||||| || || | ||||||||||||||||||||| || | ||| ||| ||||||||
Sbjct 28525 GTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTCCAT 28584
Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 127348
|| || |||||||| || || | | || | | ||| | | | ||||||
Sbjct 28585 GAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTTACCAAGAGCAACT--AGGAGA 28642
Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408
||||| | |||| |||| ||||| | |||| | | |||||| || | || |
Sbjct 28643 CGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGCGTTCATGCCAAGAAGTGCA 28702
Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468
|| || || || || | ||| | | || || || ||||| || | || |
Sbjct 28703 CAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCGACAGCCTCTGTGATGACATCT 28762
Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGAGTTC-CACAGCAAACT 127526
|| | || | | | || | | || | |||| |||||| ||| || || |
Sbjct 28763 TGGACAGCCTGCTTGCTTGGACGGT-GCTTCAAGTGGGAGAAGAGGAGGCAC-GCGAAGT 28820
Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586
| |||||||| || |||||||||||||| ||||| ||||| ||||| | ||| |
Sbjct 28821 CGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACCAGCCATCA 28880
Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646
|| |||||||| | |||||| || | | ||||| ||| ||||||||| ||||| |
Sbjct 28881 AGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGATGCCCTCAA 28940
Query 127647 CACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679
|| || || |||| ||||||| |||||||
Sbjct 28941 CAGCAGCAAAAGCAACCAGACGCTGAGCAAAGG 28973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613479515487600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |