Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq3070 96.9 6e-15
seq60 93.3 7e-14
>seq3070
Length=35956
Score = 96.9 bits (106), Expect = 6e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973
|| ||||||||||| |||||| || || || || || || ||||||| ||| |||||
Sbjct 28802 AAGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAG 28861
Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033
| |||| || | ||| | |||||| |||||||| || || | || || | ||
Sbjct 28862 AAAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCA 28921
Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093
|| || ||||| ||||| || || ||||| || || || | || | |||| | | |||
Sbjct 28922 CTGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTT 28981
Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTT 160131
|||| || |||| || ||||| || || |||||
Sbjct 28982 TTGTCTTGAATCCATCTGACAGCCCAGTCGGCTTTCTT 29019
>seq60
Length=14677
Score = 93.3 bits (102), Expect = 7e-14
Identities = 196/288 (68%), Gaps = 6/288 (2%)
Strand=Plus/Plus
Query 205108 CAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTC--TTTCACC-CT 205164
|| ||| ||||||| ||||| ||||| || | ||| ||| | ||| ||||| | |
Sbjct 9115 CAACCCAGGACATTCATTGGGGCACATTAGTGTCCA-ATCCG--CGTTCTTTTCAACACG 9171
Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224
|| ||| || || || ||||||| | | || || ||||||||||| | | | | ||
Sbjct 9172 CTTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTC 9231
Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAA 205284
| ||| |||||||| | |||||| | | || || |||||||| ||||| |
Sbjct 9232 CTTGCCATGGTTCTTTCGAAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAG 9291
Query 205285 CCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGC 205344
| || || | ||| || || | |||||| ||||| ||||| || | || |
Sbjct 9292 ATAGACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTT 9351
Query 205345 GTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGT 205392
|||||||||||| ||||| || || | ||||||| | | ||||| ||
Sbjct 9352 GTTGAAAACTCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGT 9399
Score = 89.7 bits (98), Expect = 8e-13
Identities = 160/227 (70%), Gaps = 5/227 (2%)
Strand=Plus/Plus
Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAGGCC-TGCTTCTCAGATAGTACAT 203895
||||| || || ||||||||||| | || | |||| || | | || ||||||||
Sbjct 7925 TCTTGATCGACGGTGAACTGAATAG-GTGCGGATGCGGCCATGGTACGGAGGTAGTACAT 7983
Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955
|||||||| || ||| | ||| ||| | |||||||||| | |||| || |
Sbjct 7984 TCCGGTCTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGT 8043
Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014
|||||| |||||||||||||| || || ||||| | |||||| || ||||| |
Sbjct 8044 GGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTC-AACAAAGGCACCACGATCAG 8102
Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061
||||||| | | ||| || || ||||||||||| || ||||||
Sbjct 8103 CGGCCATTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTG 8149
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795119318621600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |