Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq1292 125 2e-23
seq443 116 9e-21
seq839 84.2 5e-11
seq60 84.2 5e-11
>seq1292
Length=3705
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| | ||| ||||| || |||||||||| ||||||||| | | || | |||||||
Sbjct 1959 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 2018
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| || ||||| ||||||||||| ||||| ||||| || || ||||| || |||
Sbjct 2019 TCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCC 2078
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || |||| ||| || | | ||| || || | ||||| ||
Sbjct 2079 TGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTT 2138
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||||||||| ||||| || || || ||
Sbjct 2139 TTACCCGTGAGGGTTTTGACGAAGATCTG 2167
>seq443
Length=6205
Score = 116 bits (128), Expect = 9e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| | || || || ||||| || |||| ||||||||| | | ||| | |||||
Sbjct 3117 AGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCC 3176
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| || ||||| || || ||||| ||||| ||||||||||| || || || ||
Sbjct 3177 TCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCT 3236
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
||||||||| |||||| |||| ||| |||| | || || ||||| ||||| |||
Sbjct 3237 TGAATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTC 3296
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || ||||| || |||||
Sbjct 3297 TTTCCGGTAAGTGTCTTCACGAAGATTTG 3325
Score = 111 bits (122), Expect = 4e-19
Identities = 144/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||||| || |||||||| ||||||||||| | ||||||||| ||| ||
Sbjct 3620 CGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTA 3679
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||| || || || || |||||||| | ||||| |||||||| ||||||
Sbjct 3680 CGGCCATCTTCAAGTTGTTTGCCCGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCC 3739
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||||||||| ||| ||| |||| || || | | || || || |
Sbjct 3740 TCCTTATCCTGAATCTTGCTCTTTACGTTGTCGATAGTATCGCTGGACTCGACCTCGAGG 3799
Query 199589 GTGATCGTCTTACCCGTGA 199607
||||| ||||| || ||||
Sbjct 3800 GTGATGGTCTTGCCGGTGA 3818
>seq839
Length=32500
Score = 84.2 bits (92), Expect = 5e-11
Identities = 127/181 (70%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
||||||||| ||||||||| | | || | ||| || || || ||||||||||||||||
Sbjct 17537 CCTTTTGGATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGA 17596
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559
| | ||| || |||||||| |||||| || ||||| ||||| ||| || |
Sbjct 17597 TCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 17656
Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619
| | || || | | || || || | ||||| ||||| ||||| || || || || |
Sbjct 17657 CAATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGA 17716
Query 199620 A 199620
|
Sbjct 17717 A 17717
>seq60
Length=14677
Score = 84.2 bits (92), Expect = 5e-11
Identities = 185/276 (67%), Gaps = 6/276 (2%)
Strand=Plus/Plus
Query 167740 GTGCTTTTGGTTA---TTTTTGCGGCATATGGCGTCCTTGTAGACGATGAAGGGCATACC 167796
|| ||||||||| || ||| |||| || |||||||| | ||||| || | ||
Sbjct 8935 GTTCTTTTGGTTGCTCTTCTTGTTGCAT---GCATCCTTGTAAAGCATGAATGGATTTCC 8991
Query 167797 AACCTCCGCTTGAGCCACCAAAATGTGGTGCCAAAGTTCTTGGGCTTTTACGGTAGTTCT 167856
||| | ||||||| | | |||| || |||||| | ||||||||| | ||| | |
Sbjct 8992 GGTCTCGGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCG 9051
Query 167857 CGCTCTTCCTTCTTTTTCGTATCTCTCATAGAGGTCTTCGAAATCCTTCCCGTAAATTTC 167916
|||| ||||| || || || ||||||||||| |||| || || | || || | ||
Sbjct 9052 ACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATC 9111
Query 167917 GTCAAGACCGGGAGCTTCCTTCGGACAAAAGAGACTCCAATTTCCATCGGTCTCGACCCT 167976
| | || ||| ||| || || || | || |||||| | | | || || |
Sbjct 9112 AGCCAACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACG 9171
Query 167977 CTTCATGAAGAGGTCGGAAGTCCAAATCGCGTAGAA 168012
|||||||||||| || | | |||| | || |||||
Sbjct 9172 CTTCATGAAGAGATCCGGAATCCACAAGGCATAGAA 9207
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178867071191870
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |