Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1292 123 3e-23 seq443 86.0 7e-12 >seq1292 Length=3705 Score = 123 bits (136), Expect = 3e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| ||||||||||| || ||||| | || ||||| |||||||||||||| Sbjct 1980 TCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAG 2039 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| || ||||| || | || | | |||||||||| |||||| ||||| | Sbjct 2040 ATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 2099 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || || ||||| || || | ||||||||||| ||||| || ||||| || Sbjct 2100 TCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTGACG 2159 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 2160 AAGATCTGCAT 2170 >seq443 Length=6205 Score = 86.0 bits (94), Expect = 7e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| ||||||||| || ||||||||| | || || | || || Sbjct 3632 ACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCTTCA 3691 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || || ||||| ||||| ||||||||||| ||||| | || | | |||||| ||| Sbjct 3692 AGTTGTTTGCCCGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGA 3751 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| |||| | ||| | | | || ||||| || || || || | |||||||| || Sbjct 3752 ATCTTGCTCTTTA-CGTTGTCGATAGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTT 3810 Query 46564 GCCCGT 46569 ||| || Sbjct 3811 GCCGGT 3816 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||||| ||| ||| || ||||| |||||||| ||||||||||| | || || Sbjct 3120 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCA 3179 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| || || || || | || |||||||| | || | | |||||| || Sbjct 3180 AGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGA 3239 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| | || ||| | | | || || ||| || || |||| ||||| || || Sbjct 3240 ATCTT-TGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCTT 3298 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || ||||||||||| Sbjct 3299 TCCGGTAAGTGTCTTCACGAAGATTTGCAT 3328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565212893617200