Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3070 136 4e-27 seq1292 123 2e-23 seq443 120 3e-22 seq839 98.7 1e-15 >seq3070 Length=35956 Score = 136 bits (150), Expect = 4e-27 Identities = 196/276 (71%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| || ||||||||| || || |||| ||||| | |||||||| ||||| || Sbjct 29136 GTATGTATCGATGAGGAGAGAGTATGTTTCGGAGTGGATATTCTCCATCATAATTTGGAA 29195 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||||| ||||| || |||||| | || ||||| | ||| |||||||| || || Sbjct 29196 ACCGTAGAAGCAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGGTT 29255 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||| || |||||| || ||||| || || || ||||| |||||||| ||| Sbjct 29256 CTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAGCG 29315 Query 133347 CTCGTTGTCGTTCAA---GCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | || || | | | ||| ||| | |||||| |||| ||| | ||| || Sbjct 29316 CTCATCATCATTGAGTTTGTTATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCTTC 29375 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| || || |||||||| ||||||||||| Sbjct 29376 TGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACAT 29411 Score = 93.3 bits (102), Expect = 4e-14 Identities = 340/521 (65%), Gaps = 11/521 (2%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| || || || || || || | ||||| || || || || || || | Sbjct 28507 CATAACACCAGCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGC 28566 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTG--GTGCCG 132708 | ||| ||| | ||| || || || |||||||| | ||||| ||| || | Sbjct 28567 TAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTTACC 28626 Query 132709 ATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT-GGTTTCGCA 132767 | || | || || || | ||||| |||||||||||||||||| ||| ||||| Sbjct 28627 AAGAG--CAACTAGGAGACGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGC- 28683 Query 132768 ATTAAGTCCCAGCAGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826 || | || || || |||| || || || ||||| | || ||| ||||| ||| Sbjct 28684 GTTCATGCCAAGAAG-TGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCGA 28742 Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886 | || || |||| || || || | | ||| || || ||| ||| || || Sbjct 28743 CAGCCTCTGTGATGACATCTTGGACAGCCTGCTTGCTTGGACGGTGCTTCAAGTGGGAGA 28802 Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 | | | ||| || |||||| ||| | || || || | ||| ||||| || ||| || Sbjct 28803 AGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGA 28862 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 |||| | || | ||| | ||| || || |||||||| || || | ||||| || Sbjct 28863 AAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCAC 28922 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 ||||||| |||||| || || || ||||| ||||| |||| | || || | | || Sbjct 28923 TGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTTT 28982 Query 133067 TG-CTGGCGATCCAGCGCAGCGCCCATTCGGCCTT-TTCTT 133105 || || | ||||| | | ||||| ||||| || ||||| Sbjct 28983 TGTCTTG-AATCCATCTGACAGCCCAGTCGGCTTTCTTCTT 29022 >seq1292 Length=3705 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| |||||||| |||||||||||| |||| || || || | Sbjct 2170 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 2111 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || || |||| ||||| |||||||| || | || || Sbjct 2110 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 2051 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || || | ||| ||||| || || || || | |||||||| |||||||||| Sbjct 2050 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 1991 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || || ||||| || ||| Sbjct 1990 ATCCAAAAGGAATCCACTCTTCACTTGGTCCTTCGT 1955 >seq443 Length=6205 Score = 120 bits (132), Expect = 3e-22 Identities = 153/207 (74%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| ||||||||| |||| |||||| ||| ||| | | | |||| |||| Sbjct 3818 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACTATCGACAACG--TAAA 3761 Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || || || | || || |||||||||||| | ||||||||||| | || | |||||| Sbjct 3760 GAGCAAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCGGG 3701 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 |||||| || || || | || ||| | | |||||||||||| |||||||| | || || Sbjct 3700 CAAACAACTTGAAGATGGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTACTCT 3641 Query 38444 GCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| | || || ||| | | ||||| Sbjct 3640 CCATCTCGTCCTCCGTCTTCGTGGCGG 3614 Score = 113 bits (124), Expect = 5e-20 Identities = 150/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || || || ||||| |||||||| | || |||||| | |||||| | | Sbjct 3546 TCGTCAAGACTCTTACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCG 3487 Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | |||| | || || |||| ||||| ||||| ||||| | || ||||| || | Sbjct 3486 ACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTG 3428 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || ||||| || || || | |||||||| | |||||||||||||||||| Sbjct 3427 ATCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAA 3368 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| | || || || |||||||| || Sbjct 3367 GAATCCACCCTTCACTTGGTGCTCCG 3342 >seq839 Length=32500 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 38248 AAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGA 38305 ||||| ||||| || || || ||||| || ||||||||| | || |||||| || |||| Sbjct 17724 AAATAGCTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCCGA 17665 Query 38306 CAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACA 38365 | | | | | || || |||| ||||| |||||||||||| | |||||||| Sbjct 17664 TACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACA 17605 Query 38366 GCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 38425 || | || | ||| || || || || || |||| || ||||| ||||||||||| Sbjct 17604 ACGTTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACAT 17545 Query 38426 CCAAAAGG 38433 |||||||| Sbjct 17544 CCAAAAGG 17537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500150229702400