Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq3070 136 4e-27
seq1292 123 2e-23
seq443 120 3e-22
seq839 98.7 1e-15
>seq3070
Length=35956
Score = 136 bits (150), Expect = 4e-27
Identities = 196/276 (71%), Gaps = 3/276 (1%)
Strand=Plus/Plus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||| || ||||||||| || || |||| ||||| | |||||||| ||||| ||
Sbjct 29136 GTATGTATCGATGAGGAGAGAGTATGTTTCGGAGTGGATATTCTCCATCATAATTTGGAA 29195
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
||||| ||||| || |||||| | || ||||| | ||| |||||||| || ||
Sbjct 29196 ACCGTAGAAGCAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGGTT 29255
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|||||||| || |||||| || ||||| || || || ||||| |||||||| |||
Sbjct 29256 CTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAGCG 29315
Query 133347 CTCGTTGTCGTTCAA---GCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||| | || || | | | ||| ||| | |||||| |||| ||| | ||| ||
Sbjct 29316 CTCATCATCATTGAGTTTGTTATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCTTC 29375
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||| || || |||||||| |||||||||||
Sbjct 29376 TGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACAT 29411
Score = 93.3 bits (102), Expect = 4e-14
Identities = 340/521 (65%), Gaps = 11/521 (2%)
Strand=Plus/Plus
Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650
||| || ||| || || || || || || | ||||| || || || || || || |
Sbjct 28507 CATAACACCAGCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGC 28566
Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTG--GTGCCG 132708
| ||| ||| | ||| || || || |||||||| | ||||| ||| || |
Sbjct 28567 TAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTTACC 28626
Query 132709 ATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT-GGTTTCGCA 132767
| || | || || || | ||||| |||||||||||||||||| ||| |||||
Sbjct 28627 AAGAG--CAACTAGGAGACGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGC- 28683
Query 132768 ATTAAGTCCCAGCAGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826
|| | || || || |||| || || || ||||| | || ||| ||||| |||
Sbjct 28684 GTTCATGCCAAGAAG-TGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCGA 28742
Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886
| || || |||| || || || | | ||| || || ||| ||| || ||
Sbjct 28743 CAGCCTCTGTGATGACATCTTGGACAGCCTGCTTGCTTGGACGGTGCTTCAAGTGGGAGA 28802
Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946
| | | ||| || |||||| ||| | || || || | ||| ||||| || ||| ||
Sbjct 28803 AGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGA 28862
Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006
|||| | || | ||| | ||| || || |||||||| || || | ||||| ||
Sbjct 28863 AAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCAC 28922
Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066
||||||| |||||| || || || ||||| ||||| |||| | || || | | ||
Sbjct 28923 TGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTTT 28982
Query 133067 TG-CTGGCGATCCAGCGCAGCGCCCATTCGGCCTT-TTCTT 133105
|| || | ||||| | | ||||| ||||| || |||||
Sbjct 28983 TGTCTTG-AATCCATCTGACAGCCCAGTCGGCTTTCTTCTT 29022
>seq1292
Length=3705
Score = 123 bits (136), Expect = 2e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| ||||| |||||||| |||||||||||| |||| || || || |
Sbjct 2170 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 2111
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | | || || |||| ||||| |||||||| || | || ||
Sbjct 2110 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 2051
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| || || || | ||| ||||| || || || || | |||||||| ||||||||||
Sbjct 2050 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 1991
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||||||||| | || || || ||||| || |||
Sbjct 1990 ATCCAAAAGGAATCCACTCTTCACTTGGTCCTTCGT 1955
>seq443
Length=6205
Score = 120 bits (132), Expect = 3e-22
Identities = 153/207 (74%), Gaps = 4/207 (2%)
Strand=Plus/Minus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||| ||||| ||||||||| |||| |||||| ||| ||| | | | |||| ||||
Sbjct 3818 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACTATCGACAACG--TAAA 3761
Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383
|| || || | || || |||||||||||| | ||||||||||| | || | ||||||
Sbjct 3760 GAGCAAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCGGG 3701
Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443
|||||| || || || | || ||| | | |||||||||||| |||||||| | || ||
Sbjct 3700 CAAACAACTTGAAGATGGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTACTCT 3641
Query 38444 GCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||| | || || ||| | | |||||
Sbjct 3640 CCATCTCGTCCTCCGTCTTCGTGGCGG 3614
Score = 113 bits (124), Expect = 5e-20
Identities = 150/206 (73%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313
|||| || || || || ||||| |||||||| | || |||||| | |||||| | |
Sbjct 3546 TCGTCAAGACTCTTACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCG 3487
Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| |||| | || || |||| ||||| ||||| ||||| | || ||||| || |
Sbjct 3486 ACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTG 3428
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| || ||||| || || || | |||||||| | ||||||||||||||||||
Sbjct 3427 ATCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAA 3368
Query 38433 GAAGCGACGCTGCATTTGGTGCTGCG 38458
||| | || || || |||||||| ||
Sbjct 3367 GAATCCACCCTTCACTTGGTGCTCCG 3342
>seq839
Length=32500
Score = 98.7 bits (108), Expect = 1e-15
Identities = 135/188 (72%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 38248 AAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGA 38305
||||| ||||| || || || ||||| || ||||||||| | || |||||| || ||||
Sbjct 17724 AAATAGCTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCCGA 17665
Query 38306 CAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACA 38365
| | | | | || || |||| ||||| |||||||||||| | ||||||||
Sbjct 17664 TACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACA 17605
Query 38366 GCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 38425
|| | || | ||| || || || || || |||| || ||||| |||||||||||
Sbjct 17604 ACGTTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACAT 17545
Query 38426 CCAAAAGG 38433
||||||||
Sbjct 17544 CCAAAAGG 17537
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500150229702400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |