Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq56 125 3e-23 seq443 93.3 2e-13 seq839 84.2 9e-11 >seq56 Length=28229 Score = 125 bits (138), Expect = 3e-23 Identities = 199/286 (70%), Gaps = 11/286 (4%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || |||||||||| || || ||||| || ||||||| || ||||| ||||| | Sbjct 6809 ATGCTGTTGTTACTGTTCCTGCCTACTTCAACGACTCACAACGCCAGGCAACAAAAGACG 6750 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 |||| || || || ||||| || ||||| || | |||| |||||||| || || || | Sbjct 6749 CAGGCCAAATCGCCGGTTTGAACGTTCTCAGAGTGGTTAACGAACCTACTGCTGCCGCAC 6690 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAGTATTTGAT 451498 | || || || || | ||||| | || || ||| |||| || | ||| Sbjct 6689 TTGCCTACGGCCTCG----------AGAAAGACGAGGACAAAGTTATTGCCGTCTACGAT 6640 Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558 || ||||||||||| |||| ||||| || ||| || | || || || ||||| Sbjct 6639 TTGGGTGGAGGAACCTTCGATATCTCTGTCCTCGAAATACAAAAGGGTGTTTTCGAAGTC 6580 Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604 ||| | || |||||||| || || | || |||||||| | |||| Sbjct 6579 AAGTCTACAAATGGTGACACCCACTTGGGTGGTGAAGACTTCGATA 6534 Score = 125 bits (138), Expect = 3e-23 Identities = 199/286 (70%), Gaps = 11/286 (4%) Strand=Plus/Plus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || |||||||||| || || ||||| || ||||||| || ||||| ||||| | Sbjct 21421 ATGCTGTTGTTACTGTTCCTGCCTACTTCAACGACTCACAACGCCAGGCAACAAAAGACG 21480 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 |||| || || || ||||| || ||||| || | |||| |||||||| || || || | Sbjct 21481 CAGGCCAAATCGCCGGTTTGAACGTTCTCAGAGTGGTTAACGAACCTACTGCTGCCGCAC 21540 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAGTATTTGAT 451498 | || || || || | ||||| | || || ||| |||| || | ||| Sbjct 21541 TTGCCTACGGCCTCG----------AGAAAGACGAGGACAAAGTTATTGCCGTCTACGAT 21590 Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558 || ||||||||||| |||| ||||| || ||| || | || || || ||||| Sbjct 21591 TTGGGTGGAGGAACCTTCGATATCTCTGTCCTCGAAATACAAAAGGGTGTTTTCGAAGTC 21650 Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604 ||| | || |||||||| || || | || |||||||| | |||| Sbjct 21651 AAGTCTACAAATGGTGACACCCACTTGGGTGGTGAAGACTTCGATA 21696 >seq443 Length=6205 Score = 93.3 bits (102), Expect = 2e-13 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 391060 TCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTG 391119 |||| || || || ||||| || || || |||||||| || || || || || | ||| | Sbjct 3546 TCGTCAAGACTCTTACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCG 3487 Query 391120 AAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAA 391179 | | || || || || || ||||| || |||||||| |||||||||||||| | Sbjct 3486 ACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTGA 3427 Query 391180 TTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGG 391239 | ||| | || |||||||| |||||||| | || || || || || || | || | Sbjct 3426 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 3367 Query 391240 ATGCAACACTTCACTTAGT 391258 | | || |||||||| || Sbjct 3366 AATCCACCCTTCACTTGGT 3348 Score = 84.2 bits (92), Expect = 9e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || ||||| || || || || || || | || ||||| || || Sbjct 3328 ATGCAAATCTTCGTGAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCA 3269 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || | ||| ||| |||||||||||||| || || || || || || Sbjct 3268 GATACCATCGACAACGTGAAATCAAAGATTCAAGATAAGGAGGGTATCCCACCGGACCAG 3209 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | || || | || || |||||||| ||||| | ||| | | || || || Sbjct 3208 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAAC 3149 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | || || | ||||| || || || Sbjct 3148 ATCCAGAAAGAGTCCACACTGCATTTGGT 3120 >seq839 Length=32500 Score = 84.2 bits (92), Expect = 9e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 391053 AATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGAT 391112 |||| ||||| || || || || || || || || || ||||| || || || || ||| Sbjct 17723 AATAGCTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCCGAT 17664 Query 391113 AACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 391172 | ||||| | | || || || || || ||||| |||||||| || || |||||| Sbjct 17663 ACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAA 17604 Query 391173 CGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAAC 391213 ||||| || ||| | || || ||||| || || ||| |||| Sbjct 17603 CGTTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGAAC 17563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975627016849880