Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq56 125 3e-23
seq443 93.3 2e-13
seq839 84.2 9e-11
>seq56
Length=28229
Score = 125 bits (138), Expect = 3e-23
Identities = 199/286 (70%), Gaps = 11/286 (4%)
Strand=Plus/Minus
Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379
|||| || |||||||||| || || ||||| || ||||||| || ||||| ||||| |
Sbjct 6809 ATGCTGTTGTTACTGTTCCTGCCTACTTCAACGACTCACAACGCCAGGCAACAAAAGACG 6750
Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439
|||| || || || ||||| || ||||| || | |||| |||||||| || || || |
Sbjct 6749 CAGGCCAAATCGCCGGTTTGAACGTTCTCAGAGTGGTTAACGAACCTACTGCTGCCGCAC 6690
Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAGTATTTGAT 451498
| || || || || | ||||| | || || ||| |||| || | |||
Sbjct 6689 TTGCCTACGGCCTCG----------AGAAAGACGAGGACAAAGTTATTGCCGTCTACGAT 6640
Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558
|| ||||||||||| |||| ||||| || ||| || | || || || |||||
Sbjct 6639 TTGGGTGGAGGAACCTTCGATATCTCTGTCCTCGAAATACAAAAGGGTGTTTTCGAAGTC 6580
Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604
||| | || |||||||| || || | || |||||||| | ||||
Sbjct 6579 AAGTCTACAAATGGTGACACCCACTTGGGTGGTGAAGACTTCGATA 6534
Score = 125 bits (138), Expect = 3e-23
Identities = 199/286 (70%), Gaps = 11/286 (4%)
Strand=Plus/Plus
Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379
|||| || |||||||||| || || ||||| || ||||||| || ||||| ||||| |
Sbjct 21421 ATGCTGTTGTTACTGTTCCTGCCTACTTCAACGACTCACAACGCCAGGCAACAAAAGACG 21480
Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439
|||| || || || ||||| || ||||| || | |||| |||||||| || || || |
Sbjct 21481 CAGGCCAAATCGCCGGTTTGAACGTTCTCAGAGTGGTTAACGAACCTACTGCTGCCGCAC 21540
Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAGTATTTGAT 451498
| || || || || | ||||| | || || ||| |||| || | |||
Sbjct 21541 TTGCCTACGGCCTCG----------AGAAAGACGAGGACAAAGTTATTGCCGTCTACGAT 21590
Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558
|| ||||||||||| |||| ||||| || ||| || | || || || |||||
Sbjct 21591 TTGGGTGGAGGAACCTTCGATATCTCTGTCCTCGAAATACAAAAGGGTGTTTTCGAAGTC 21650
Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604
||| | || |||||||| || || | || |||||||| | ||||
Sbjct 21651 AAGTCTACAAATGGTGACACCCACTTGGGTGGTGAAGACTTCGATA 21696
>seq443
Length=6205
Score = 93.3 bits (102), Expect = 2e-13
Identities = 140/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 391060 TCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTG 391119
|||| || || || ||||| || || || |||||||| || || || || || | ||| |
Sbjct 3546 TCGTCAAGACTCTTACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCG 3487
Query 391120 AAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAA 391179
| | || || || || || ||||| || |||||||| |||||||||||||| |
Sbjct 3486 ACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTGA 3427
Query 391180 TTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGG 391239
| ||| | || |||||||| |||||||| | || || || || || || | || |
Sbjct 3426 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 3367
Query 391240 ATGCAACACTTCACTTAGT 391258
| | || |||||||| ||
Sbjct 3366 AATCCACCCTTCACTTGGT 3348
Score = 84.2 bits (92), Expect = 9e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| || ||||| || || || || || || | || ||||| || ||
Sbjct 3328 ATGCAAATCTTCGTGAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCA 3269
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| ||| || | ||| ||| |||||||||||||| || || || || || ||
Sbjct 3268 GATACCATCGACAACGTGAAATCAAAGATTCAAGATAAGGAGGGTATCCCACCGGACCAG 3209
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|||||| | || || | || || |||||||| ||||| | ||| | | || || ||
Sbjct 3208 CAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAAC 3149
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258
|| | || || | ||||| || || ||
Sbjct 3148 ATCCAGAAAGAGTCCACACTGCATTTGGT 3120
>seq839
Length=32500
Score = 84.2 bits (92), Expect = 9e-11
Identities = 115/161 (71%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 391053 AATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGAT 391112
|||| ||||| || || || || || || || || || ||||| || || || || |||
Sbjct 17723 AATAGCTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCCGAT 17664
Query 391113 AACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 391172
| ||||| | | || || || || || ||||| |||||||| || || ||||||
Sbjct 17663 ACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAA 17604
Query 391173 CGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAAC 391213
||||| || ||| | || || ||||| || || ||| ||||
Sbjct 17603 CGTTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGAAC 17563
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975627016849880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |